Browse Element(s) Details


OsAffx.14477.1.S1_at

Description tigr:9632.m05799
TID=OsAffx.14477.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to CAA303711.1 protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5930011/11hypothetical protein
LOC_Os06g028501/11expressed protein
LOC_Os06g026801/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g59250OsAffx.22848.4.S1_at2/114+35015176..35021134retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g59250OsAffx.22848.3.S1_x_at2/114+35015176..35021134retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g59250OsAffx.22848.4.S1_x_at1/114+35015176..35021134retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g59260Os.264.1.S1_at11/114+35026349..35027661Peroxidase family protein, expressed
LOC_Os04g59270OsAffx.9246.2.S1_at11/114+35028112..35029350hypothetical protein
LOC_Os04g59280Os.31312.2.S1_x_at4/114+35031419..35034674retrotransposon protein, putative, unclassified
LOC_Os04g59280Os.31312.5.S1_x_at4/114+35031419..35034674retrotransposon protein, putative, unclassified
LOC_Os04g59290OsAffx.22492.1.S1_x_at1/114+35035303..35041455retrotransposon protein, putative, unclassified
LOC_Os04g59290OsAffx.22492.1.S1_at1/114+35035303..35041455retrotransposon protein, putative, unclassified
LOC_Os04g59300OsAffx.14477.1.S1_at11/114+35045648..35047185hypothetical protein
LOC_Os04g59300OsAffx.31661.2.S1_at1/114+35045648..35047185hypothetical protein
LOC_Os04g59310Os.53827.1.S1_at11/114+35048224..35051178MAP3K-like protein kinase, putative, expressed
LOC_Os04g59320Os.54119.1.S1_at10/114+35051975..35057701protein kinase family protein, putative, expressed
LOC_Os04g59320Os.6595.2.S1_s_at10/114+35051975..35057701protein kinase family protein, putative, expressed
LOC_Os04g59330OsAffx.4214.1.S1_x_at11/114+35058615..35060079expressed protein
LOC_Os04g59330Os.8314.1.S1_at11/114+35058615..35060079expressed protein
LOC_Os04g59350OsAffx.14478.1.S1_at11/114+35060596..35061683hypothetical protein
LOC_Os04g59340Os.37570.1.S1_at11/114+35061587..35063617expressed protein
LOC_Os04g59340Os.37570.1.S1_s_at11/114+35061587..35063617expressed protein
LOC_Os04g59340Os.10647.2.S1_at7/114+35061587..35063617expressed protein
LOC_Os04g59360OsAffx.26665.1.S1_at11/114+35064131..35067101csAtPR5, putative
LOC_Os04g59370Os.51125.1.S1_at11/114+35068706..35070078Pathogenesis-related protein 5 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009821biological_processalkaloid biosynthesis
GO:0016844molecular_functionstrictosidine synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14477.1.S1_at--1003--9453Chr06:1046430..1046466 (25 bp)
TCGGCCTCTGCGTGCTCTGCGGCAA
LOC_Os06g02850
OsAffx.14477.1.S1_at--688--7211Chr04:35046851..35046875 (25 bp)
GTCGTTCGGCTTGCTCAGGAGGTGT
LOC_Os04g59300
OsAffx.14477.1.S1_at--1113--7471Chr04:35046828..35046852 (25 bp)
GTGGGAGCCTGGGAGTCGCCGTCTT
LOC_Os04g59300
OsAffx.14477.1.S1_at--978--1851Chr04:35046309..35046333 (25 bp)
ACGACGGAGGCCATCGATGTGCCGT
LOC_Os04g59300
OsAffx.14477.1.S1_at--88--891Chr04:35046302..35046326 (25 bp)
AGGCCATCGATGTGCCGTTCAACTT
LOC_Os04g59300
OsAffx.14477.1.S1_at--783--9191Chr04:35046208..35046302 (25 bp)
TCCTCAACCGGAAAATTTTGCACTA
LOC_Os04g59300
OsAffx.14477.1.S1_at--21--4251Chr04:35046201..35046295 (25 bp)
CCGGAAAATTTTGCACTACACGATT
LOC_Os04g59300
OsAffx.14477.1.S1_at--493--5111Chr04:35046189..35046213 (25 bp)
GCACTACACGATTGCACACAACAAG
LOC_Os04g59300
OsAffx.14477.1.S1_at--733--2211Chr04:35046169..35046193 (25 bp)
ACAAGAGCAAACACACGCAGGCTTT
LOC_Os04g59300
OsAffx.14477.1.S1_at--459--911Chr04:35046151..35046175 (25 bp)
AGGCTTTGCGGCACCACACAAAAGA
LOC_Os04g59300
OsAffx.14477.1.S1_at--781--4651Chr04:35046144..35046168 (25 bp)
GCGGCACCACACAAAAGAACCTTTT
LOC_Os04g59300
Target Sequence 
TCGGCCTCTGCGTGCTCTGCGGCAACAGCGACATCAAGAGGGACAACTACGCCGTGTCGTTCGGCTTGCTCAGGAGGTGT
GGGAGCCTGGGAGTCGCCGTCTTCCTCCTCTCCAACTGGTTCACCGTCTCCATGGTGGAGCGTCAGCGTTTGCTCGCCGG
AGAAGAAGCTGGTGGTGCCGGAGAGCGTGTGCGGGCGGCCGTTGGGGCTGCAGTTCCACCACGCCTCTGGCGACCTGTAC
GTGGCCGACGCGTATCTGGGCCTCCTGAGGGTGCCGGCGCGCGGCGGGCTGGCCAAGGTGGTGACGACGGAGGCCATCGA
TGTGCCGTTCAACTTCCTCAACCGGAAAATTTTGCACTACACGATTGCACACAACAAGAGCAAACACACGCAGGCTTTGC
GGCACCACACAAAAGAACCTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14477.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis