Browse Element(s) Details


OsAffx.14478.1.S1_at

Description tigr:9632.m05802
TID=OsAffx.14478.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to CAA30378.1 protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5935011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g59290OsAffx.22492.1.S1_x_at1/114+35035303..35041455retrotransposon protein, putative, unclassified
LOC_Os04g59290OsAffx.22492.1.S1_at1/114+35035303..35041455retrotransposon protein, putative, unclassified
LOC_Os04g59300OsAffx.14477.1.S1_at11/114+35045648..35047185hypothetical protein
LOC_Os04g59300OsAffx.31661.2.S1_at1/114+35045648..35047185hypothetical protein
LOC_Os04g59310Os.53827.1.S1_at11/114+35048224..35051178MAP3K-like protein kinase, putative, expressed
LOC_Os04g59320Os.54119.1.S1_at10/114+35051975..35057701protein kinase family protein, putative, expressed
LOC_Os04g59320Os.6595.2.S1_s_at10/114+35051975..35057701protein kinase family protein, putative, expressed
LOC_Os04g59330OsAffx.4214.1.S1_x_at11/114+35058615..35060079expressed protein
LOC_Os04g59330Os.8314.1.S1_at11/114+35058615..35060079expressed protein
LOC_Os04g59350OsAffx.14478.1.S1_at11/114+35060596..35061683hypothetical protein
LOC_Os04g59340Os.37570.1.S1_at11/114+35061587..35063617expressed protein
LOC_Os04g59340Os.37570.1.S1_s_at11/114+35061587..35063617expressed protein
LOC_Os04g59340Os.10647.2.S1_at7/114+35061587..35063617expressed protein
LOC_Os04g59360OsAffx.26665.1.S1_at11/114+35064131..35067101csAtPR5, putative
LOC_Os04g59370Os.51125.1.S1_at11/114+35068706..35070078Pathogenesis-related protein 5 precursor, putative, expressed
LOC_Os04g59380Os.257.1.S1_at11/114+35078601..35081273expressed protein
LOC_Os04g59390Os.35344.3.S1_x_at11/114+35084388..35090006transposon protein, putative, Mutator sub-class
LOC_Os04g59390Os.35344.18.S1_x_at9/114+35084388..35090006transposon protein, putative, Mutator sub-class
LOC_Os04g59390OsAffx.22940.5.S1_x_at3/114+35084388..35090006transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14478.1.S1_at--85--211Chr04:35061585..35061609 (25 bp)
ATTTGCGATCCGAGGCATTGTTCGA
LOC_Os04g59350
OsAffx.14478.1.S1_at--912--471Chr04:35061578..35061602 (25 bp)
ATCCGAGGCATTGTTCGATTACGCT
LOC_Os04g59350
OsAffx.14478.1.S1_at--644--6751Chr04:35060848..35060867 (20 bp)
GTTCACTTGGAAATCGTCTGAGCAT
LOC_Os04g59350
OsAffx.14478.1.S1_at--1114--7171Chr04:35060833..35060857 (25 bp)
GTCTGAGCATCAGCTGTCGAGCGAG
LOC_Os04g59350
OsAffx.14478.1.S1_at--775--4731Chr04:35060821..35060845 (25 bp)
GCTGTCGAGCGAGGCCATCAAATCA
LOC_Os04g59350
OsAffx.14478.1.S1_at--134--6231Chr04:35060811..35060835 (25 bp)
GAGGCCATCAAATCACGCCGGCTGA
LOC_Os04g59350
OsAffx.14478.1.S1_at--114--4491Chr04:35060795..35060819 (25 bp)
GCCGGCTGACGCAAGCCAACATGGA
LOC_Os04g59350
OsAffx.14478.1.S1_at--15--7711Chr04:35060767..35060791 (25 bp)
GGGTCCCTGTCATTCTTCATTTAAT
LOC_Os04g59350
OsAffx.14478.1.S1_at--273--691Chr04:35060711..35060735 (25 bp)
ATGACGTTCCGGCTGCTGTGTCTCC
LOC_Os04g59350
OsAffx.14478.1.S1_at--425--9131Chr04:35060698..35060722 (25 bp)
TGCTGTGTCTCCCATCATCTTGATG
LOC_Os04g59350
OsAffx.14478.1.S1_at--74--5051Chr04:35060635..35060659 (25 bp)
GCAGAGCAGCTTCAGTCGACAGCGA
LOC_Os04g59350
Target Sequence 
ATTTGCGATCCGAGGCATTGTTCGATTACGCTTAGATTCAATCCGGACCGGGAATAACAAGTTCACTTGGAAATCGTCTG
AGCATCAGCTGTCGAGCGAGGCCATCAAATCACGCCGGCTGACGCAAGCCAACATGGAGGGGGGTCCCTGTCATTCTTCA
TTTAATGGTTGTGGAATGGAGGCTTGGATGCGCGGGAATGACGTTCCGGCTGCTGTGTCTCCCATCATCTTGATGGGACA
GGGCATACCTACCGCACGCCGCCTGACGTCCGGGCAGAGCAGCTTCAGTCGACAGCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14478.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis