Browse Element(s) Details


OsAffx.4214.1.S1_x_at

Description tigr:9632.m05801
TID=OsAffx.4214.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5933011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g59280Os.31312.2.S1_x_at4/114+35031419..35034674retrotransposon protein, putative, unclassified
LOC_Os04g59280Os.31312.5.S1_x_at4/114+35031419..35034674retrotransposon protein, putative, unclassified
LOC_Os04g59290OsAffx.22492.1.S1_x_at1/114+35035303..35041455retrotransposon protein, putative, unclassified
LOC_Os04g59290OsAffx.22492.1.S1_at1/114+35035303..35041455retrotransposon protein, putative, unclassified
LOC_Os04g59300OsAffx.14477.1.S1_at11/114+35045648..35047185hypothetical protein
LOC_Os04g59300OsAffx.31661.2.S1_at1/114+35045648..35047185hypothetical protein
LOC_Os04g59310Os.53827.1.S1_at11/114+35048224..35051178MAP3K-like protein kinase, putative, expressed
LOC_Os04g59320Os.54119.1.S1_at10/114+35051975..35057701protein kinase family protein, putative, expressed
LOC_Os04g59320Os.6595.2.S1_s_at10/114+35051975..35057701protein kinase family protein, putative, expressed
LOC_Os04g59330OsAffx.4214.1.S1_x_at11/114+35058615..35060079expressed protein
LOC_Os04g59330Os.8314.1.S1_at11/114+35058615..35060079expressed protein
LOC_Os04g59350OsAffx.14478.1.S1_at11/114+35060596..35061683hypothetical protein
LOC_Os04g59340Os.37570.1.S1_at11/114+35061587..35063617expressed protein
LOC_Os04g59340Os.37570.1.S1_s_at11/114+35061587..35063617expressed protein
LOC_Os04g59340Os.10647.2.S1_at7/114+35061587..35063617expressed protein
LOC_Os04g59360OsAffx.26665.1.S1_at11/114+35064131..35067101csAtPR5, putative
LOC_Os04g59370Os.51125.1.S1_at11/114+35068706..35070078Pathogenesis-related protein 5 precursor, putative, expressed
LOC_Os04g59380Os.257.1.S1_at11/114+35078601..35081273expressed protein
LOC_Os04g59390Os.35344.3.S1_x_at11/114+35084388..35090006transposon protein, putative, Mutator sub-class
LOC_Os04g59390Os.35344.18.S1_x_at9/114+35084388..35090006transposon protein, putative, Mutator sub-class
LOC_Os04g59390OsAffx.22940.5.S1_x_at3/114+35084388..35090006transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4214.1.S1_x_at--780--2671Chr04:35059127..35059151 (25 bp)
AAGCGCTGCAAGTACTTCCTCATCT
LOC_Os04g59330
OsAffx.4214.1.S1_x_at--881--4791Chr04:35059212..35059236 (25 bp)
GCTCCCAGAAGCCACAGATAGTCAT
LOC_Os04g59330
OsAffx.4214.1.S1_x_at--515--1291Chr04:35059326..35059350 (25 bp)
AGAGCATCACGTTCGACAACTTCAT
LOC_Os04g59330
OsAffx.4214.1.S1_x_at--799--9351Chr04:35059338..35059362 (25 bp)
TCGACAACTTCATAATCCAGGCGGG
LOC_Os04g59330
OsAffx.4214.1.S1_x_at--918--8471Chr04:35059392..35059416 (25 bp)
TGGCGACGACCAACTCGACGGTGAA
LOC_Os04g59330
OsAffx.4214.1.S1_x_at--1019--8971Chr04:35059413..35059437 (25 bp)
TGAAGCTGACGTACCGGAACACGGG
LOC_Os04g59330
OsAffx.4214.1.S1_x_at--1010--5491Chr04:35059429..35059453 (25 bp)
GAACACGGGCACGTTCTTCGGGATC
LOC_Os04g59330
OsAffx.4214.1.S1_x_at--653--8471Chr04:35059500..35059524 (25 bp)
TGGCGTCCGGCGATCTCAACAAGTT
LOC_Os04g59330
OsAffx.4214.1.S1_x_at--78--9711Chr04:35059515..35059539 (25 bp)
TCAACAAGTTCTACCAGGCCCGGAG
LOC_Os04g59330
OsAffx.4214.1.S1_x_at--606--711Chr04:35059649..35059673 (25 bp)
ATGATCCTGAGGACGACGGTGCACT
LOC_Os04g59330
OsAffx.4214.1.S1_x_at--691--4431Chr04:35059721..35059745 (25 bp)
GCCATCGAGTGCAAGGTCCTCATGA
LOC_Os04g59330
Target Sequence 
AAGCGCTGCAAGTACTTCCTCATCTTCGTCCTCGGCTTCGTCGTCCTCTTCTCCTTCTTCGCCCTCGTCCTCTGGGGCGC
CAGCCGCTCCCAGAAGCCACAGATAGTCATCAAGAGCATCACGTTCGACAACTTCATAATCCAGGCGGGGACGGACGCGT
CGCTGGTGCCGACGGACATGGCGACGACCAACTCGACGGTGAAGCTGACGTACCGGAACACGGGCACGTTCTTCGGGATC
CACGTGACGGCGGACCCGTTCACGCTGTCGTACAGCCAGCTGACGCTGGCGTCCGGCGATCTCAACAAGTTCTACCAGGC
CCGGAGCAGCCGGAGGACGGTGAGCGTGGGGGTGATGGGGAACAAGGTGCCGCTGTACGGCGGAGGGCCGACGCTGACGG
CGGGGAAGGGCAGCGGCAGCATGGCTCCGGTGCCGATGATCCTGAGGACGACGGTGCACTCGAGGGCGTACGTGCTGGGG
GCGCTGGTGAAGCCCAAGTTCACACGCGCCATCGAGTGCAAGGTCCTCATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4214.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis