Browse Element(s) Details


Os.257.1.S1_at

Description gb:AK105834.1
DB_XREF= gi:32991043
TID=Os.257.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.257 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-203-E10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-203-E10, full insert sequence.
FL= gb:AK099856.1 gb:AK105834.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5938011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g59320Os.54119.1.S1_at10/114+35051975..35057701protein kinase family protein, putative, expressed
LOC_Os04g59320Os.6595.2.S1_s_at10/114+35051975..35057701protein kinase family protein, putative, expressed
LOC_Os04g59330OsAffx.4214.1.S1_x_at11/114+35058615..35060079expressed protein
LOC_Os04g59330Os.8314.1.S1_at11/114+35058615..35060079expressed protein
LOC_Os04g59350OsAffx.14478.1.S1_at11/114+35060596..35061683hypothetical protein
LOC_Os04g59340Os.37570.1.S1_at11/114+35061587..35063617expressed protein
LOC_Os04g59340Os.37570.1.S1_s_at11/114+35061587..35063617expressed protein
LOC_Os04g59340Os.10647.2.S1_at7/114+35061587..35063617expressed protein
LOC_Os04g59360OsAffx.26665.1.S1_at11/114+35064131..35067101csAtPR5, putative
LOC_Os04g59370Os.51125.1.S1_at11/114+35068706..35070078Pathogenesis-related protein 5 precursor, putative, expressed
LOC_Os04g59380Os.257.1.S1_at11/114+35078601..35081273expressed protein
LOC_Os04g59390Os.35344.3.S1_x_at11/114+35084388..35090006transposon protein, putative, Mutator sub-class
LOC_Os04g59390Os.35344.18.S1_x_at9/114+35084388..35090006transposon protein, putative, Mutator sub-class
LOC_Os04g59390OsAffx.22940.5.S1_x_at3/114+35084388..35090006transposon protein, putative, Mutator sub-class
LOC_Os04g59400Os.12497.1.S1_at11/114+35098023..35104909expressed protein
LOC_Os04g59400OsAffx.26666.1.S1_x_at11/114+35098023..35104909expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0031225cellular_componentanchored to membrane
GO:0003676molecular_functionnucleic acid binding
GO:0003700molecular_functiontranscription factor activity
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.257.1.S1_at--1077--7551Chr04:35080920..35080944 (25 bp)
GGGCTGTACTCCAACCTGGACGAGC
LOC_Os04g59380
Os.257.1.S1_at--398--1771Chr04:35080933..35080957 (25 bp)
ACCTGGACGAGCTGGACGTCTTCAA
LOC_Os04g59380
Os.257.1.S1_at--252--10731Chr04:35080976..35081000 (25 bp)
TTGCTTTGTCGTCGTCTACAGGGCC
LOC_Os04g59380
Os.257.1.S1_at--269--3731Chr04:35080991..35081015 (25 bp)
CTACAGGGCCTGATCGATTAGTGAT
LOC_Os04g59380
Os.257.1.S1_at--1066--9551Chr04:35081035..35081059 (25 bp)
TCTTAGCTAGCATCATTTCCTTCAC
LOC_Os04g59380
Os.257.1.S1_at--809--10291Chr04:35081050..35081074 (25 bp)
TTTCCTTCACTCTTCGTTAATTGCA
LOC_Os04g59380
Os.257.1.S1_at--1037--7171Chr04:35081140..35081164 (25 bp)
GTCTGATTATTGTACTATCTGATCG
LOC_Os04g59380
Os.257.1.S1_at--1145--9371Chr04:35081162..35081186 (25 bp)
TCGATCGATCGGTATTGACTAGTGA
LOC_Os04g59380
Os.257.1.S1_at--166--7871Chr04:35081172..35081196 (25 bp)
GGTATTGACTAGTGATCAGCGTATC
LOC_Os04g59380
Os.257.1.S1_at--15--6291Chr04:35081219..35081243 (25 bp)
GATGTTTGTTAGTTTCTTCTACTGA
LOC_Os04g59380
Os.257.1.S1_at--360--6091Chr04:35081249..35081273 (25 bp)
GAGTACATTATTGCATACTAGAGCT
LOC_Os04g59380
Target Sequence 
GGGCTGTACTCCAACCTGGACGAGCTGGACGTCTTCAACCCCACAGCCATTCTCCCTTGCTTTGTCGTCGTCTACAGGGC
CTGATCGATTAGTGATCATTAACCAATAATAATAATCTTAGCTAGCATCATTTCCTTCACTCTTCGTTAATTGCATGTAA
TCAATCGATCGATCGATGATGATGATGATCCCATTTATAATTAATTAATTCATCGTTAATGTCTGATTATTGTACTATCT
GATCGATCGATCGGTATTGACTAGTGATCAGCGTATCAATCAATTTGTACAATCAGATAGATGTTTGTTAGTTTCTTCTA
CTGAAGGAGGAGTACATTATTGCATACTAGAGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.257.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis