Browse Element(s) Details


OsAffx.26666.1.S1_x_at

Description tigr:9632.m05808
TID=OsAffx.26666.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to CAA30372.1 protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5940011/11expressed protein
LOC_Os08g289801/11RNA exonuclease 4, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g59380Os.257.1.S1_at11/114+35078601..35081273expressed protein
LOC_Os04g59390Os.35344.3.S1_x_at11/114+35084388..35090006transposon protein, putative, Mutator sub-class
LOC_Os04g59390Os.35344.18.S1_x_at9/114+35084388..35090006transposon protein, putative, Mutator sub-class
LOC_Os04g59390OsAffx.22940.5.S1_x_at3/114+35084388..35090006transposon protein, putative, Mutator sub-class
LOC_Os04g59400Os.12497.1.S1_at11/114+35098023..35104909expressed protein
LOC_Os04g59400OsAffx.26666.1.S1_x_at11/114+35098023..35104909expressed protein
LOC_Os04g59420Os.12995.1.S1_at11/114+35107944..35109540expressed protein
LOC_Os04g59430Os.56150.1.S1_at11/114+35110490..35114020B3 DNA binding domain containing protein, expressed
LOC_Os04g59440Os.175.1.S1_at11/114+35117992..35119114Photosystem II 22 kDa protein, chloroplast precursor, putative, expressed
LOC_Os04g59450Os.9298.1.S1_at11/114+35125261..35127167Serine/threonine-protein kinase SAPK5, putative, expressed
LOC_Os04g59460OsAffx.26667.1.S1_at11/114+35128041..35136553hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005622cellular_componentintracellular
GO:0004527molecular_functionexonuclease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26666.1.S1_x_at--780--1171Chr04:35100075..35100099 (25 bp)
AGTACCTCTGTACAAGTGTTGGAAA
LOC_Os04g59400
OsAffx.26666.1.S1_x_at--670--5492Chr04:35100117..35100141 (25 bp)
GAACAGGTGCAGCTCAATCATGATG
LOC_Os04g59400
OsAffx.26666.1.S1_x_at--9--631Chr04:35100249..35100273 (25 bp)
ATGCTTCTAAACAATGGCGCTGGTA
LOC_Os04g59400
OsAffx.26666.1.S1_x_at--983--2491Chr04:35100274..35100298 (25 bp)
AACAGGCTGCAGATAGTGCTCAGTT
LOC_Os04g59400
OsAffx.26666.1.S1_x_at--830--6331Chr04:35100311..35100335 (25 bp)
GATGCTTCTAGACCAGGCTGCAGAT
LOC_Os04g59400
OsAffx.26666.1.S1_x_at--85--6251Chr04:35100333..35100357 (25 bp)
GATGGACAAGCTACGCTTCACGGTC
LOC_Os04g59400
OsAffx.26666.1.S1_x_at--429--10491Chr04:35100349..35100373 (25 bp)
TTCACGGTCAGAGCATTGGCCAAAT
LOC_Os04g59400
OsAffx.26666.1.S1_x_at--353--5931Chr04:35100408..35100432 (25 bp)
GAGCAGTCTGATACCATAGAGTTTT
LOC_Os04g59400
OsAffx.26666.1.S1_x_at--693--2511Chr04:35100565..35100589 (25 bp)
AACATATCTGTTCTCAAGGGCAACA
LOC_Os04g59400
OsAffx.26666.1.S1_x_at--535--2391Chr04:35100589..35100613 (25 bp)
AAACTTCGAGTATTCCTGACCATCC
LOC_Os04g59400
OsAffx.26666.1.S1_x_at--146--9611Chr04:35100645..35100669 (25 bp)
TCATCAGTTACCCTCAACCATGGAA
LOC_Os04g59400
Target Sequence 
AGTACCTCTGTACAAGTGTTGGAAAATTATAATATGAATGGAGAACAGGTGCAGCTCAATCATGATGCTGATGAACATTC
AGGCGATGATCGCCCAATAAAGAATGAGCAAATGCTTTTGAATCATGTTATGGGTGTGCATGATTTGGATAATCATGACC
AGAACAGTGAACAAATGCTTCTAAACAATGGCGCTGGTAAACAGGCTGCAGATAGTGCTCAGTTACAGGAAGACCAGATG
CTTCTAGACCAGGCTGCAGATGGACAAGCTACGCTTCACGGTCAGAGCATTGGCCAAATGATTCCTGTAATCAATCTGGA
AGATGATTATGAAGAGCAGTCTGATACCATAGAGTTTTCAGAATCCAAAAGTGACACCTTACATAAACTTACTGAAAATG
TTCTACCAGAACATATCTGTTCTCAAGGGCAACAAACTTCGAGTATTCCTGACCATCCTCAGACTAACGTCCCAGCTGCT
GCTGCTGCTTCATCAGTTACCCTCAACCATGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26666.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis