Browse Element(s) Details


OsAffx.26667.1.S1_at

Description tigr:9632.m05814
TID=OsAffx.26667.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5946011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g59400Os.12497.1.S1_at11/114+35098023..35104909expressed protein
LOC_Os04g59400OsAffx.26666.1.S1_x_at11/114+35098023..35104909expressed protein
LOC_Os04g59420Os.12995.1.S1_at11/114+35107944..35109540expressed protein
LOC_Os04g59430Os.56150.1.S1_at11/114+35110490..35114020B3 DNA binding domain containing protein, expressed
LOC_Os04g59440Os.175.1.S1_at11/114+35117992..35119114Photosystem II 22 kDa protein, chloroplast precursor, putative, expressed
LOC_Os04g59450Os.9298.1.S1_at11/114+35125261..35127167Serine/threonine-protein kinase SAPK5, putative, expressed
LOC_Os04g59460OsAffx.26667.1.S1_at11/114+35128041..35136553hypothetical protein
LOC_Os04g59470OsAffx.14479.1.S1_at11/114+35139528..35140385No apical meristem protein, expressed
LOC_Os04g59480OsAffx.14480.1.S1_at11/114+35140985..35144392POT family protein, expressed
LOC_Os04g59494Os.2242.1.S1_at11/114+35150057..35163433importin beta-2 subunit family protein, putative, expressed
LOC_Os04g59494Os.35077.1.S1_s_at11/114+35150057..35163433importin beta-2 subunit family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000166molecular_functionnucleotide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26667.1.S1_at--1018--3631Chr04:35129399..35129422 (24 bp)
CTTCCATCCAGCTGGCAATGAGGTA
LOC_Os04g59460
OsAffx.26667.1.S1_at--535--2691Chr04:35128670..35128694 (25 bp)
AAGCTTCTGAGGAGTGTTCCTTCCC
LOC_Os04g59460
OsAffx.26667.1.S1_at--788--10131Chr04:35128601..35128625 (25 bp)
TATGCCATTCTCAGGCGTAATCTTG
LOC_Os04g59460
OsAffx.26667.1.S1_at--1062--551Chr04:35128563..35128587 (25 bp)
ATCCATTCATACTCGTAGGGTCAGA
LOC_Os04g59460
OsAffx.26667.1.S1_at--245--4951Chr04:35128523..35128547 (25 bp)
GCATTCCGCACGATTGATGCCGTGA
LOC_Os04g59460
OsAffx.26667.1.S1_at--915--6351Chr04:35128508..35128532 (25 bp)
GATGCCGTGACTTACTCAGACATTG
LOC_Os04g59460
OsAffx.26667.1.S1_at--582--7271Chr04:35128478..35128502 (25 bp)
GTCCAAATTGATCGTGGTGTCCTTG
LOC_Os04g59460
OsAffx.26667.1.S1_at--810--1951Chr04:35128445..35128469 (25 bp)
ACTGAACCCAATGATTCTCTTCTTG
LOC_Os04g59460
OsAffx.26667.1.S1_at--317--8871Chr04:35128398..35128422 (25 bp)
TGATGAGATGTTCTCTTCTGCTCGG
LOC_Os04g59460
OsAffx.26667.1.S1_at--401--10591Chr04:35128254..35128407 (25 bp)
TTCTGCTCGGGTGACAAGTGATTCT
LOC_Os04g59460
OsAffx.26667.1.S1_at--1006--6111Chr04:35128071..35128095 (25 bp)
GAGTGACATTATGGGCTCCTTTAGC
LOC_Os04g59460
Target Sequence 
CTTCCATCCAGCTGGCAATGAGGTAATAATAAATTCAGAAGTGTGGGATCTAAGGAAATTTAAGCTTCTGAGGAGTGTTC
CTTCCCTGGACCAGACAGTAATAAAATTTAATGGCAGAGGGGATGTTATCTATGCCATTCTCAGGCGTAATCTTGACGAT
GTAACATCATCCATTCATACTCGTAGGGTCAGACATCCCCTGTTCCCTGCATTCCGCACGATTGATGCCGTGACTTACTC
AGACATTGCAACAGTCCAAATTGATCGTGGTGTCCTTGATCTTGCAACTGAACCCAATGATTCTCTTCTTGGGGTTGTTG
CTATGGATGATCCTGATGAGATGTTCTCTTCTGCTCGGGTGACAAGTGATTCTGATATAAGTAACAGCAGTGATGACGGT
GGTGACGATGAGGATATTGACAGTGGGGATGAAAATGATGACGATGATGATGATGCTGAGTTCATTGATGAAGGNGATTT
TGAAGGGGGAGGAGGACTGCTGGAGATTATGGGTGAAGAGGATGGTGATGAGAGTGACATTATGGGCTCCTTTAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26667.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis