Browse Element(s) Details


Os.2242.1.S1_at

Description gb:AF095707.1
DB_XREF= gi:3777597
GEN=rps17
TID=Os.2242.1
CNT=15
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.2242 (NCBI UniGene Cluster)
DEF=Oryza sativa clone LS273 30S ribosomal protein S17 (rps17) mRNA, nuclear gene encoding chloroplast protein, complete cds.
PROD=30S ribosomal protein S17
FL= gb:AF095707.1 gb:AK059422.1 gb:AK099298.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5949411/11importin beta-2 subunit family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g59450Os.9298.1.S1_at11/114+35125261..35127167Serine/threonine-protein kinase SAPK5, putative, expressed
LOC_Os04g59460OsAffx.26667.1.S1_at11/114+35128041..35136553hypothetical protein
LOC_Os04g59470OsAffx.14479.1.S1_at11/114+35139528..35140385No apical meristem protein, expressed
LOC_Os04g59480OsAffx.14480.1.S1_at11/114+35140985..35144392POT family protein, expressed
LOC_Os04g59494Os.2242.1.S1_at11/114+35150057..35163433importin beta-2 subunit family protein, putative, expressed
LOC_Os04g59494Os.35077.1.S1_s_at11/114+35150057..35163433importin beta-2 subunit family protein, putative, expressed
LOC_Os04g59510Os.9618.1.S1_at11/114+35163816..35171348PHD finger transcription factor, putative, expressed
LOC_Os04g59510OsAffx.14481.1.S1_at9/114+35163816..35171348PHD finger transcription factor, putative, expressed
LOC_Os04g59510Os.28544.1.S1_at1/114+35163816..35171348PHD finger transcription factor, putative, expressed
LOC_Os04g59520Os.4621.1.S1_at11/114+35179775..35183477C2 domain-containing protein, putative, expressed
LOC_Os04g59520Os.4621.1.S1_s_at11/114+35179775..35183477C2 domain-containing protein, putative, expressed
LOC_Os04g59520OsAffx.26668.1.S1_at11/114+35179775..35183477C2 domain-containing protein, putative, expressed
LOC_Os04g59520OsAffx.30059.2.S1_x_at1/114+35179775..35183477C2 domain-containing protein, putative, expressed
LOC_Os04g59530Os.47463.1.S1_x_at2/114+35185197..35186475transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g59530Os.14491.2.S1_x_at2/114+35185197..35186475transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0000059biological_processprotein import into nucleus, docking
GO:0006412biological_processprotein biosynthesis
GO:0000312cellular_componentplastid small ribosomal subunit
GO:0005634cellular_componentnucleus
GO:0005643cellular_componentnuclear pore
GO:0005737cellular_componentcytoplasm
GO:0005843cellular_componentcytosolic small ribosomal subunit (sensu Eukaryota)
GO:0003735molecular_functionstructural constituent of ribosome
GO:0008565molecular_functionprotein transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2242.1.S1_at--932--3811Chr04:35162964..35162988 (25 bp)
CTCCTTCCTCCGATTGATGGATTTT
LOC_Os04g59494
Os.2242.1.S1_at--531--8871Chr04:35162978..35163002 (25 bp)
TGATGGATTTTTCTTCTCCCGTAAT
LOC_Os04g59494
Os.2242.1.S1_at--919--471Chr04:35163023..35163047 (25 bp)
ATCTGTGCTGTACTATGTACTCCAT
LOC_Os04g59494
Os.2242.1.S1_at--319--211Chr04:35163056..35163080 (25 bp)
ATTTGCTCTGGATTTCGAACTTCCC
LOC_Os04g59494
Os.2242.1.S1_at--706--1511Chr04:35163082..35163106 (25 bp)
AGCAGCAATGCTATGTTCCCTTTTC
LOC_Os04g59494
Os.2242.1.S1_at--1032--9312Chr12:21568166..21568226 (24 bp)
TCCCTTTTCATTTCATCTGCTCATA
NONE
Os.2242.1.S1_at--393--9491Chr04:35163113..35163137 (25 bp)
TCTGCTCATATGCATGTTGTTACTC
LOC_Os04g59494
Os.2242.1.S1_at--1123--8651Chr04:35163184..35163208 (25 bp)
TGTGTAATTCTGTTATCCTAGCCCC
LOC_Os04g59494
Os.2242.1.S1_at--483--5471Chr04:35163260..35163284 (25 bp)
GAACTCAATAACCTTCGACTAGTGA
LOC_Os04g59494
Os.2242.1.S1_at--1117--10031Chr04:35163279..35163303 (25 bp)
TAGTGATACAACACCTCCGAACTAC
LOC_Os04g59494
Os.2242.1.S1_at--159--2711Chr04:35163320..35163344 (25 bp)
AAGCTTCCCGGTTTCATTGTGATGG
LOC_Os04g59494
Target Sequence 
CTCCTTCCTCCGATTGATGGATTTTTCTTCTCCCGTAATCGTAAATTCGTAATGTAATAATCTGTGCTGTACTATGTACT
CCATTGATTTTTATTTGCTCTGGATTTCGAACTTCCCCAGCAGCAATGCTATGTTCCCTTTTCATTTCATCTGCTCATAT
GCATGTTGTTACTCAGNGAAACCATACTACCAATATAATGCTACTAGAGTAGAATGTGCTTGTGTAATTCTGTTATCCTA
GCCCCCATCCCATCGAAGAAATTATTTAGGGCTTCTATAGCATCGAAAGACTAAAAGAACTCAATAACCTTCGACTAGTG
ATACAACACCTCCGAACTACGTTCCCGGTCTTCAGCAAGCTTCCCGGTTTCATTGTGATGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2242.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis