Browse Element(s) Details


Os.4621.1.S1_at

Description gb:CB651732
DB_XREF= gi:29646725
DB_XREF=OSJNEb16N03.r
CLONE=OSJNEb16N03
TID=Os.4621.1
CNT=4
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.4621 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with moderate similarity to protein pir:T00782 (A.thaliana) T00782 probable anthranilate phosphoribosyltransferase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5952011/11C2 domain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g59494Os.2242.1.S1_at11/114+35150057..35163433importin beta-2 subunit family protein, putative, expressed
LOC_Os04g59494Os.35077.1.S1_s_at11/114+35150057..35163433importin beta-2 subunit family protein, putative, expressed
LOC_Os04g59510Os.9618.1.S1_at11/114+35163816..35171348PHD finger transcription factor, putative, expressed
LOC_Os04g59510OsAffx.14481.1.S1_at9/114+35163816..35171348PHD finger transcription factor, putative, expressed
LOC_Os04g59510Os.28544.1.S1_at1/114+35163816..35171348PHD finger transcription factor, putative, expressed
LOC_Os04g59520Os.4621.1.S1_at11/114+35179775..35183477C2 domain-containing protein, putative, expressed
LOC_Os04g59520Os.4621.1.S1_s_at11/114+35179775..35183477C2 domain-containing protein, putative, expressed
LOC_Os04g59520OsAffx.26668.1.S1_at11/114+35179775..35183477C2 domain-containing protein, putative, expressed
LOC_Os04g59520OsAffx.30059.2.S1_x_at1/114+35179775..35183477C2 domain-containing protein, putative, expressed
LOC_Os04g59530Os.47463.1.S1_x_at2/114+35185197..35186475transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g59530Os.14491.2.S1_x_at2/114+35185197..35186475transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g59540Os.52597.1.S1_at11/114+35194225..35199766Phosphatidylinositol-4-phosphate 5-Kinase family protein, expressed
LOC_Os04g59550Os.6715.1.S1_at11/114+35199872..35202466glucose-6-phosphate/phosphate translocator, putative, expressed
LOC_Os04g59560Os.49141.1.S1_at10/114+35203978..35207760CAP-Gly domain containing protein, expressed
LOC_Os04g59570Os.5577.2.S1_a_at11/114+35207902..35210490expressed protein
LOC_Os04g59570Os.5577.2.S1_at11/114+35207902..35210490expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
GO:0005829cellular_componentcytosol
GO:0004791molecular_functionthioredoxin-disulfide reductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4621.1.S1_at--343--7271Chr04:35182892..35182916 (25 bp)
GTCCTTGCCAATTCACTCGTCATCT
LOC_Os04g59520
Os.4621.1.S1_at--428--9231Chr04:35182893..35182917 (25 bp)
TCCTTGCCAATTCACTCGTCATCTG
LOC_Os04g59520
Os.4621.1.S1_at--578--3391Chr04:35182931..35182955 (25 bp)
CAGCAGAAGCATCATAACATACGGG
LOC_Os04g59520
Os.4621.1.S1_at--514--10471Chr04:35182962..35182986 (25 bp)
TTACCCGTCCTCTACTCTCAAAATT
LOC_Os04g59520
Os.4621.1.S1_at--983--3991Chr04:35182967..35182991 (25 bp)
CGTCCTCTACTCTCAAAATTCACAA
LOC_Os04g59520
Os.4621.1.S1_at--1032--7251Chr04:35182968..35182992 (25 bp)
GTCCTCTACTCTCAAAATTCACAAG
LOC_Os04g59520
Os.4621.1.S1_at--789--9534Chr06:17982233..17982257 (25 bp)
TCTACTCTCAAAATTCACAAGGCGC
NONE
Os.4621.1.S1_at--723--9894Chr06:17982235..17982259 (25 bp)
TACTCTCAAAATTCACAAGGCGCGC
NONE
Os.4621.1.S1_at--315--3772Chr04:35182976..35183000 (25 bp)
CTCTCAAAATTCACAAGGCGCGCGC
LOC_Os04g59520
Os.4621.1.S1_at--842--5371Chr04:35183107..35183131 (25 bp)
GAAGAAGAACAACTAATAAGTCTGG
LOC_Os04g59520
Os.4621.1.S1_at--838--3231Chr04:35183116..35183140 (25 bp)
CAACTAATAAGTCTGGAAGGAGCAA
LOC_Os04g59520
Target Sequence 
GTCCTTGCCAATTCACTCGTCATCTGGACCAAGTACGTGCAGCAGAAGCATCATAACATACGGGGAGTTTTTACCCGTCC
TCTACTCTCAAAATTCACAAGGCGCGCGCGCGAGGTCCAGTCCAGTCCCGGGCGGTGGTAGACGCAGACGCAGACAGGCA
GCCATCCGCCCGGCGAGCCAACGCAATCATTCGCGCTCAAATAATGCGCGCAAGAGAAGAAGAACAACTAATAAGTCTGG
AAGGAGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4621.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis