Browse Element(s) Details


Os.49141.1.S1_at

Description gb:AK102150.1
DB_XREF= gi:32987359
TID=Os.49141.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49141 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033086D17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033086D17, full insert sequence.
FL= gb:AK102150.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5956010/11CAP-Gly domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g59520Os.4621.1.S1_at11/114+35179775..35183477C2 domain-containing protein, putative, expressed
LOC_Os04g59520Os.4621.1.S1_s_at11/114+35179775..35183477C2 domain-containing protein, putative, expressed
LOC_Os04g59520OsAffx.26668.1.S1_at11/114+35179775..35183477C2 domain-containing protein, putative, expressed
LOC_Os04g59520OsAffx.30059.2.S1_x_at1/114+35179775..35183477C2 domain-containing protein, putative, expressed
LOC_Os04g59530Os.47463.1.S1_x_at2/114+35185197..35186475transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g59530Os.14491.2.S1_x_at2/114+35185197..35186475transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g59540Os.52597.1.S1_at11/114+35194225..35199766Phosphatidylinositol-4-phosphate 5-Kinase family protein, expressed
LOC_Os04g59550Os.6715.1.S1_at11/114+35199872..35202466glucose-6-phosphate/phosphate translocator, putative, expressed
LOC_Os04g59560Os.49141.1.S1_at10/114+35203978..35207760CAP-Gly domain containing protein, expressed
LOC_Os04g59570Os.5577.2.S1_a_at11/114+35207902..35210490expressed protein
LOC_Os04g59570Os.5577.2.S1_at11/114+35207902..35210490expressed protein
LOC_Os04g59580Os.48291.1.S1_at11/114+35211264..35213719Zinc finger, C3HC4 type family protein, expressed
LOC_Os04g59590Os.53076.1.S1_at11/114+35215925..35220062dehydration-responsive protein, putative, expressed
LOC_Os04g59600Os.50410.1.S1_at11/114+35220262..35224690pentatricopeptide, putative, expressed
LOC_Os04g59600Os.50410.2.S1_at11/114+35220262..35224690pentatricopeptide, putative, expressed
LOC_Os04g59600Os.50410.1.S1_x_at11/114+35220262..35224690pentatricopeptide, putative, expressed
LOC_Os04g59600Os.50410.1.S2_at11/114+35220262..35224690pentatricopeptide, putative, expressed
LOC_Os04g59610Os.52938.1.S1_a_at11/114+35224850..35226493expressed protein
LOC_Os04g59620OsAffx.14482.1.S1_at11/114+35226841..35240731SNF2 family N-terminal domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007021biological_processtubulin folding
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0009524cellular_componentphragmoplast
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49141.1.S1_at--1022--5391Chr04:35205427..35205451 (25 bp)
GAACCACTTGGAAAGCATGATGGCA
LOC_Os04g59560
Os.49141.1.S1_at--854--851NONE
ATGGCATGGTGAAAGGCATTCGCTT
NONE
Os.49141.1.S1_at--808--3591Chr04:35204755..35204779 (25 bp)
CATTCGCTTTTTCGAGTGTCCTCAA
LOC_Os04g59560
Os.49141.1.S1_at--533--8271Chr04:35204729..35204753 (25 bp)
GGCATGGAGCTATTGTTAGGCCAGA
LOC_Os04g59560
Os.49141.1.S1_at--551--1811Chr04:35204236..35204260 (25 bp)
ACCCATATTCAGAATTGCTCCCGTT
LOC_Os04g59560
Os.49141.1.S1_at--568--5191Chr04:35204225..35204249 (25 bp)
GAATTGCTCCCGTTAAAATCTTTCG
LOC_Os04g59560
Os.49141.1.S1_at--566--10191Chr04:35204149..35204173 (25 bp)
TATATGTGCGTGTGCTTGTTCCTGA
LOC_Os04g59560
Os.49141.1.S1_at--232--4911Chr04:35204136..35204160 (25 bp)
GCTTGTTCCTGATCCCATTCTGGGA
LOC_Os04g59560
Os.49141.1.S1_at--962--9311Chr04:35204124..35204148 (25 bp)
TCCCATTCTGGGATGACCATGGTGA
LOC_Os04g59560
Os.49141.1.S1_at--132--10371Chr04:35204079..35204103 (25 bp)
TTTTAAGTACTGAGCCATCTGGACG
LOC_Os04g59560
Os.49141.1.S1_at--799--3531Chr04:35204064..35204088 (25 bp)
CATCTGGACGCTTGAGTTGGAAGTT
LOC_Os04g59560
Target Sequence 
GAACCACTTGGAAAGCATGATGGCATGGTGAAAGGCATTCGCTTTTTCGAGTGTCCTCAANGGCATGGAGCTATTGTTAG
GCCAGAGAAAGTAAAGGTCNGGGGACTACCCAGAGANGGGACCCTTTTGAAGANGAGGAGATCTANGCGGTGCGCCNTTT
ANCGTTGGNNATNGTCCTCTANGGATACCCATATTCAGAATTGCTCCCGTTAAAATCTTTCGCCCTTTTTTTGGTCTATT
GGTTTGAGAATTAAGATCATTGAACATGAAGAATATATGTGCGTGTGCTTGTTCCTGATCCCATTCTGGGATGACCATGG
TGAAATTGGGGATACTGTTGTACTTTTAAGTACTGAGCCATCTGGACGCTTGAGTTGGAAGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49141.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis