Browse Element(s) Details


OsAffx.14482.1.S1_at

Description tigr:9632.m05831
TID=OsAffx.14482.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to At5g63950MBM17_5
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5962011/11SNF2 family N-terminal domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g59550Os.6715.1.S1_at11/114+35199872..35202466glucose-6-phosphate/phosphate translocator, putative, expressed
LOC_Os04g59560Os.49141.1.S1_at10/114+35203978..35207760CAP-Gly domain containing protein, expressed
LOC_Os04g59570Os.5577.2.S1_a_at11/114+35207902..35210490expressed protein
LOC_Os04g59570Os.5577.2.S1_at11/114+35207902..35210490expressed protein
LOC_Os04g59580Os.48291.1.S1_at11/114+35211264..35213719Zinc finger, C3HC4 type family protein, expressed
LOC_Os04g59590Os.53076.1.S1_at11/114+35215925..35220062dehydration-responsive protein, putative, expressed
LOC_Os04g59600Os.50410.1.S1_at11/114+35220262..35224690pentatricopeptide, putative, expressed
LOC_Os04g59600Os.50410.2.S1_at11/114+35220262..35224690pentatricopeptide, putative, expressed
LOC_Os04g59600Os.50410.1.S1_x_at11/114+35220262..35224690pentatricopeptide, putative, expressed
LOC_Os04g59600Os.50410.1.S2_at11/114+35220262..35224690pentatricopeptide, putative, expressed
LOC_Os04g59610Os.52938.1.S1_a_at11/114+35224850..35226493expressed protein
LOC_Os04g59620OsAffx.14482.1.S1_at11/114+35226841..35240731SNF2 family N-terminal domain containing protein, expressed
LOC_Os04g59630NANA4+35243473..35244021expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006346biological_processmethylation-dependent chromatin silencing
GO:0009908biological_processflower development
GO:0000786cellular_componentnucleosome
GO:0016585cellular_componentchromatin remodeling complex
GO:0003677molecular_functionDNA binding
GO:0003682molecular_functionchromatin binding
GO:0004386molecular_functionhelicase activity
GO:0005524molecular_functionATP binding
GO:0016887molecular_functionATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14482.1.S1_at--1025--9491Chr04:35228116..35228140 (25 bp)
TCTCTCACCCAACACAAAATGCAAG
LOC_Os04g59620
OsAffx.14482.1.S1_at--1085--1091Chr04:35228093..35228117 (25 bp)
AGTGGAGAATGGTCAGCAGCTTGTC
LOC_Os04g59620
OsAffx.14482.1.S1_at--352--1511Chr04:35227599..35228103 (25 bp)
AGCAGCTTGTCATGGATGAGTCCTT
LOC_Os04g59620
OsAffx.14482.1.S1_at--200--6891Chr04:35227542..35227566 (25 bp)
GTATAGCTGGCGTGAACCGTCATGG
LOC_Os04g59620
OsAffx.14482.1.S1_at--462--8471Chr04:35227520..35227544 (25 bp)
TGGCGTCCTGTTCTGTAAAACTGAG
LOC_Os04g59620
OsAffx.14482.1.S1_at--1038--2551Chr04:35227502..35227526 (25 bp)
AACTGAGACCACTGCAACTTTGGGT
LOC_Os04g59620
OsAffx.14482.1.S1_at--699--3251Chr04:35227488..35227512 (25 bp)
CAACTTTGGGTGACGACGGTGCAAT
LOC_Os04g59620
OsAffx.14482.1.S1_at--457--5991Chr04:35227229..35227253 (25 bp)
GAGACATTATGGTGAGGCGCTGCTA
LOC_Os04g59620
OsAffx.14482.1.S1_at--944--8871Chr04:35227217..35227241 (25 bp)
TGAGGCGCTGCTATGCTCCTTGGGA
LOC_Os04g59620
OsAffx.14482.1.S1_at--447--4771Chr04:35227203..35227227 (25 bp)
GCTCCTTGGGAGCACATTTGTAGAG
LOC_Os04g59620
OsAffx.14482.1.S1_at--624--631Chr04:35227076..35227100 (25 bp)
ATGCAGCCGAGCTCATTGGAATGCT
LOC_Os04g59620
Target Sequence 
TCTCTCACCCAACACAAAATGCAAGTGGAGAATGGTCAGCAGCTTGTCATGGATGAGTCCTTGAAGAAGCACATCCAGTT
CTTGGAACAACAAGGTATAGCTGGCGTGAACCGTCATGGCGTCCTGTTCTGTAAAACTGAGACCACTGCAACTTTGGGTG
ACGACGGTGCAATAAACAGGAAGGTGAGAGACATTATGGTGAGGCGCTGCTATGCTCCTTGGGAGCACATTTGTAGAGAT
GTCGAGAAAAAGAGCTTGATCGATCAAGTGAAGGAGATGAGCAAGAAGATGGATGGTTTGGGAGATACAATGGGACGGAT
TGTTGCTTTGGAGGAGGAGTATGCAGCCGAGCTCATTGGAATGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14482.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis