Browse Element(s) Details


Os.52938.1.S1_a_at

Description gb:AK105982.1
DB_XREF= gi:32991191
TID=Os.52938.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.52938 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-205-G02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-205-G02, full insert sequence.
FL= gb:AK105982.1 gb:AK105888.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5961011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g59550Os.6715.1.S1_at11/114+35199872..35202466glucose-6-phosphate/phosphate translocator, putative, expressed
LOC_Os04g59560Os.49141.1.S1_at10/114+35203978..35207760CAP-Gly domain containing protein, expressed
LOC_Os04g59570Os.5577.2.S1_a_at11/114+35207902..35210490expressed protein
LOC_Os04g59570Os.5577.2.S1_at11/114+35207902..35210490expressed protein
LOC_Os04g59580Os.48291.1.S1_at11/114+35211264..35213719Zinc finger, C3HC4 type family protein, expressed
LOC_Os04g59590Os.53076.1.S1_at11/114+35215925..35220062dehydration-responsive protein, putative, expressed
LOC_Os04g59600Os.50410.1.S1_at11/114+35220262..35224690pentatricopeptide, putative, expressed
LOC_Os04g59600Os.50410.2.S1_at11/114+35220262..35224690pentatricopeptide, putative, expressed
LOC_Os04g59600Os.50410.1.S1_x_at11/114+35220262..35224690pentatricopeptide, putative, expressed
LOC_Os04g59600Os.50410.1.S2_at11/114+35220262..35224690pentatricopeptide, putative, expressed
LOC_Os04g59610Os.52938.1.S1_a_at11/114+35224850..35226493expressed protein
LOC_Os04g59620OsAffx.14482.1.S1_at11/114+35226841..35240731SNF2 family N-terminal domain containing protein, expressed
LOC_Os04g59630NANA4+35243473..35244021expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52938.1.S1_a_at--1056--1071Chr04:35225749..35225773 (25 bp)
AGGGCATGGCCCTGCACGTGCACTG
LOC_Os04g59610
Os.52938.1.S1_a_at--734--2591Chr04:35226048..35226072 (25 bp)
AACGCTAAGTACAACAGGCTCGAGT
LOC_Os04g59610
Os.52938.1.S1_a_at--887--5131Chr04:35226096..35226215 (25 bp)
GCAAACGCCGAGACGACGCACAAGA
LOC_Os04g59610
Os.52938.1.S1_a_at--1119--6191Chr04:35226214..35226238 (25 bp)
GAGGCATGCGCTGGAGCAACTGCAC
LOC_Os04g59610
Os.52938.1.S1_a_at--1148--931Chr04:35226272..35226296 (25 bp)
AGGAAGTGGTCTAGCCCGGACGCCA
LOC_Os04g59610
Os.52938.1.S1_a_at--1062--3671Chr04:35226323..35226347 (25 bp)
CTTTGATGCATATCGGGAACCCCAC
LOC_Os04g59610
Os.52938.1.S1_a_at--618--9191Chr04:35226368..35226392 (25 bp)
TGCCTTGTGCGCATCAATTCCAATT
LOC_Os04g59610
Os.52938.1.S1_a_at--1065--3151Chr04:35226383..35226407 (25 bp)
AATTCCAATTCTTTCATCCACCGGA
LOC_Os04g59610
Os.52938.1.S1_a_at--770--571Chr04:35226398..35226422 (25 bp)
ATCCACCGGACACTTGACATGTATG
LOC_Os04g59610
Os.52938.1.S1_a_at--385--751Chr04:35226420..35226444 (25 bp)
ATGTATAGTATGTACCCACTCCACG
LOC_Os04g59610
Os.52938.1.S1_a_at--514--691Chr04:35226454..35226478 (25 bp)
ATGAGAAACGATTGCCTTTCCAAGC
LOC_Os04g59610
Target Sequence 
AGGGCATGGCCCTGCACGTGCACTGCTTCGTCAGCGGCGCCAACCTCCTGCATGGCCTCGCCGCCGGCTTCAGGTACTAC
GTCTTCTCCAAGGAGCTGCCGCTGGTTCTCAAGGCAGTTGTTCATGGCGACGCATTGCTGTTCGCGGAGCAGCCGGAGCT
GCTGGAGGCGAAGGTGTGGGTGCACTTCCACTCCAGCTCCAACGCTAAGTACAACAGGCTCGAGTGCTGGGGTCCTCTCA
GGGAGGCTGCAAACGCCGAGACGACGCACAAGAGGCATGCGCTGGAGCAACTGCACAACGCAATCACCAAAGGCACAAGA
AGGCGTAGGAGGAAGTGGTCTAGCCCGGACGCCATCTTCAGCGCCCTGCTCGCCCTTCTCCTTTGATGCATATCGGGAAC
CCCACACATTGTCTTNTTTTTGCTCTGCCTTGTGCGCATCAATTCCAATTCTTTCATCCACCGGACACTTGACATGTATG
TATAGTATGTACCCACTCCACGATCAACAAAATGAGAAACGATTGCCTTTCCAAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52938.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis