Browse Element(s) Details


OsAffx.26668.1.S1_at

Description tigr:9632.m05819
TID=OsAffx.26668.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=probable anthranilate phosphoribosyltransferase (EC 2.4.2.18) T22J18.21 - Arabidopsis thaliana
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5952011/11C2 domain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g59494Os.2242.1.S1_at11/114+35150057..35163433importin beta-2 subunit family protein, putative, expressed
LOC_Os04g59494Os.35077.1.S1_s_at11/114+35150057..35163433importin beta-2 subunit family protein, putative, expressed
LOC_Os04g59510Os.9618.1.S1_at11/114+35163816..35171348PHD finger transcription factor, putative, expressed
LOC_Os04g59510OsAffx.14481.1.S1_at9/114+35163816..35171348PHD finger transcription factor, putative, expressed
LOC_Os04g59510Os.28544.1.S1_at1/114+35163816..35171348PHD finger transcription factor, putative, expressed
LOC_Os04g59520Os.4621.1.S1_at11/114+35179775..35183477C2 domain-containing protein, putative, expressed
LOC_Os04g59520Os.4621.1.S1_s_at11/114+35179775..35183477C2 domain-containing protein, putative, expressed
LOC_Os04g59520OsAffx.26668.1.S1_at11/114+35179775..35183477C2 domain-containing protein, putative, expressed
LOC_Os04g59520OsAffx.30059.2.S1_x_at1/114+35179775..35183477C2 domain-containing protein, putative, expressed
LOC_Os04g59530Os.47463.1.S1_x_at2/114+35185197..35186475transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g59530Os.14491.2.S1_x_at2/114+35185197..35186475transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g59540Os.52597.1.S1_at11/114+35194225..35199766Phosphatidylinositol-4-phosphate 5-Kinase family protein, expressed
LOC_Os04g59550Os.6715.1.S1_at11/114+35199872..35202466glucose-6-phosphate/phosphate translocator, putative, expressed
LOC_Os04g59560Os.49141.1.S1_at10/114+35203978..35207760CAP-Gly domain containing protein, expressed
LOC_Os04g59570Os.5577.2.S1_a_at11/114+35207902..35210490expressed protein
LOC_Os04g59570Os.5577.2.S1_at11/114+35207902..35210490expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
GO:0005829cellular_componentcytosol
GO:0004791molecular_functionthioredoxin-disulfide reductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26668.1.S1_at--441--5171Chr04:35182287..35182311 (25 bp)
GCAAGTGGAAGAACCCGGTGACCAC
LOC_Os04g59520
OsAffx.26668.1.S1_at--1074--2731Chr04:35182295..35182319 (25 bp)
AAGAACCCGGTGACCACCATCCTGG
LOC_Os04g59520
OsAffx.26668.1.S1_at--793--1731Chr04:35182310..35182334 (25 bp)
ACCATCCTGGTGCACGTGCTGTTCC
LOC_Os04g59520
OsAffx.26668.1.S1_at--625--8611Chr04:35182317..35182341 (25 bp)
TGGTGCACGTGCTGTTCCTCATCCT
LOC_Os04g59520
OsAffx.26668.1.S1_at--207--9131Chr04:35182326..35182350 (25 bp)
TGCTGTTCCTCATCCTGGTGTGCTA
LOC_Os04g59520
OsAffx.26668.1.S1_at--952--8791Chr04:35182329..35182353 (25 bp)
TGTTCCTCATCCTGGTGTGCTACCC
LOC_Os04g59520
OsAffx.26668.1.S1_at--579--1751Chr04:35182383..35182407 (25 bp)
ACCTGTTCGTCATCGGGGTGTGGAA
LOC_Os04g59520
OsAffx.26668.1.S1_at--1022--2651Chr04:35182427..35182451 (25 bp)
AAGCCGGCGCACATGGACACGGCGC
LOC_Os04g59520
OsAffx.26668.1.S1_at--129--5891Chr04:35182564..35182588 (25 bp)
GAGCGTGGCCGGGAGGGTGCAGACG
LOC_Os04g59520
OsAffx.26668.1.S1_at--895--1391Chr04:35182584..35182608 (25 bp)
AGACGGTGGTGGGTGACCTGGCCAC
LOC_Os04g59520
OsAffx.26668.1.S1_at--331--9511Chr04:35182677..35182701 (25 bp)
TCTCGCTCATCATCGCGGTGGTGCT
LOC_Os04g59520
Target Sequence 
GCAAGTGGAAGAACCCGGTGACCACCATCCTGGTGCACGTGCTGTTCCTCATCCTGGTGTGCTACCCGGAGCTGATCCTC
CCCACCGTCTTCCTCTACCTGTTCGTCATCGGGGTGTGGAACTACCGGAGGCGGCCGCGGAAGCCGGCGCACATGGACAC
GGCGCTGTCGCACGCGGAGGCGGAGCAGGTGCACCCGGACGAGCTGGACGAGGAGTTCGACACGTTCCCCACCAGCAAGC
CCGGGGACGTGGTGCGGATGAGGTACGACCGGCTGCGGAGCGTGGCCGGGAGGGTGCAGACGGTGGTGGGTGACCTGGCC
ACGCAGGGGGAGCGCGCCCAGGCGCTGCTCAGCTGGCGCGACCCCCGTGCCACCTCCATCTTCGTCCTGCTCTCGCTCAT
CATCGCGGTGGTGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26668.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis