Browse Element(s) Details


Os.175.1.S1_at

Description gb:D84392.1
DB_XREF= gi:1304214
GEN=PSII-S
TID=Os.175.1
CNT=16
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.175 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) PSII-S mRNA for 22 kDa protein of photosystem II precursor, complete cds.
PROD=22 kDa protein of photosystem II precursor
FL= gb:D84392.1 gb:AK071638.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5944011/11Photosystem II 22 kDa protein, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g59400Os.12497.1.S1_at11/114+35098023..35104909expressed protein
LOC_Os04g59400OsAffx.26666.1.S1_x_at11/114+35098023..35104909expressed protein
LOC_Os04g59420Os.12995.1.S1_at11/114+35107944..35109540expressed protein
LOC_Os04g59430Os.56150.1.S1_at11/114+35110490..35114020B3 DNA binding domain containing protein, expressed
LOC_Os04g59440Os.175.1.S1_at11/114+35117992..35119114Photosystem II 22 kDa protein, chloroplast precursor, putative, expressed
LOC_Os04g59450Os.9298.1.S1_at11/114+35125261..35127167Serine/threonine-protein kinase SAPK5, putative, expressed
LOC_Os04g59460OsAffx.26667.1.S1_at11/114+35128041..35136553hypothetical protein
LOC_Os04g59470OsAffx.14479.1.S1_at11/114+35139528..35140385No apical meristem protein, expressed
LOC_Os04g59480OsAffx.14480.1.S1_at11/114+35140985..35144392POT family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0010196biological_processnonphotochemical quenching
GO:0009517cellular_componentPSII associated light-harvesting complex II
GO:0016168molecular_functionchlorophyll binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.175.1.S1_at--762--6731Chr04:35118667..35118691 (25 bp)
GTTCACCAAGGCGAACGAGCTCTTC
LOC_Os04g59440
Os.175.1.S1_at--758--3191Chr04:35118673..35118697 (25 bp)
CAAGGCGAACGAGCTCTTCGTGGGT
LOC_Os04g59440
Os.175.1.S1_at--458--3591Chr04:35118917..35118941 (25 bp)
CATTTTGCTTTTACTCCACTTAATT
LOC_Os04g59440
Os.175.1.S1_at--335--2251Chr04:35118942..35118966 (25 bp)
AAATTAGCTTCTTCTGATAGTAGTA
LOC_Os04g59440
Os.175.1.S1_at--263--2891Chr04:35118966..35118990 (25 bp)
AAGGAGACGGTTAAGTGGACTAGCT
LOC_Os04g59440
Os.175.1.S1_at--631--10011Chr04:35118986..35119010 (25 bp)
TAGCTAGTCAATGTCAATCCTCTCC
LOC_Os04g59440
Os.175.1.S1_at--772--3031Chr04:35119001..35119025 (25 bp)
AATCCTCTCCTCTGTACTGTAGTGG
LOC_Os04g59440
Os.175.1.S1_at--297--1191Chr04:35119026..35119050 (25 bp)
AGTAGTATCTACTTATATGCATATA
LOC_Os04g59440
Os.175.1.S1_at--404--131Chr04:35119060..35119084 (25 bp)
ATTCAGGACACAACAATCAATCGGT
LOC_Os04g59440
Os.175.1.S1_at--406--3071Chr04:35119074..35119098 (25 bp)
AATCAATCGGTACTCCTGAATGCAT
LOC_Os04g59440
Os.175.1.S1_at--1005--9431Chr04:35119080..35119104 (25 bp)
TCGGTACTCCTGAATGCATGATGGG
LOC_Os04g59440
Target Sequence 
GTTCACCAAGGCGAACGAGCTCTTCGTGGGTCGCCTCGCGCAGCTGGGGATCGCCTTCTCCCTCATCGGCGAGATCATCA
CCGGGAAGGGCGCGCTGGCGCAGCTCAACATCGAGACCGGCGTCCCCATCAACGAGATCGAGCCGCTCCTCCTCTTCAAC
ATCCTCTTCTTCTTCTTCGCCGCCATCAACCCCGGAACCGGCAAGTTCGTCACCGACGACAACGACGACCAATGAGCCCA
GCCCACCCCTCATTTTGCTTTTACTCCACTTAATTAAATTAGCTTCTTCTGATAGTAGTAAGGAGACGGTTAAGTGGACT
AGCTAGTCAATGTCAATCCTCTCCTCTGTACTGTAGTGGAGTAGTATCTACTTATATGCATATACTAGCAAAAATTCAGG
ACACAACAATCAATCGGTACTCCTGAATGCATGATGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.175.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis