Browse Element(s) Details


Os.12995.1.S1_at

Description gb:AK105853.1
DB_XREF= gi:32991062
TID=Os.12995.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12995 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-203-H02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-203-H02, full insert sequence.
FL= gb:AK071887.1 gb:AK061031.1 gb:AK105853.1 gb:AK104290.1 gb:AK059830.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5942011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g59390Os.35344.3.S1_x_at11/114+35084388..35090006transposon protein, putative, Mutator sub-class
LOC_Os04g59390Os.35344.18.S1_x_at9/114+35084388..35090006transposon protein, putative, Mutator sub-class
LOC_Os04g59390OsAffx.22940.5.S1_x_at3/114+35084388..35090006transposon protein, putative, Mutator sub-class
LOC_Os04g59400Os.12497.1.S1_at11/114+35098023..35104909expressed protein
LOC_Os04g59400OsAffx.26666.1.S1_x_at11/114+35098023..35104909expressed protein
LOC_Os04g59420Os.12995.1.S1_at11/114+35107944..35109540expressed protein
LOC_Os04g59430Os.56150.1.S1_at11/114+35110490..35114020B3 DNA binding domain containing protein, expressed
LOC_Os04g59440Os.175.1.S1_at11/114+35117992..35119114Photosystem II 22 kDa protein, chloroplast precursor, putative, expressed
LOC_Os04g59450Os.9298.1.S1_at11/114+35125261..35127167Serine/threonine-protein kinase SAPK5, putative, expressed
LOC_Os04g59460OsAffx.26667.1.S1_at11/114+35128041..35136553hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12995.1.S1_at--632--4431Chr04:35109029..35109053 (25 bp)
GCCATGCCTCTCAGCTAGGAGTAGC
LOC_Os04g59420
Os.12995.1.S1_at--621--10091Chr04:35109044..35109068 (25 bp)
TAGGAGTAGCTTCTTACCTCCCTCA
LOC_Os04g59420
Os.12995.1.S1_at--388--3351Chr04:35109076..35109100 (25 bp)
CACGTACTCTTAATCTCGTCGGATT
LOC_Os04g59420
Os.12995.1.S1_at--630--4851Chr04:35109146..35109170 (25 bp)
GCATATTACTACCTAGTACTCCGTA
LOC_Os04g59420
Os.12995.1.S1_at--171--1851Chr04:35109229..35109253 (25 bp)
ACGAATGAATCACAGCTAGCAGACA
LOC_Os04g59420
Os.12995.1.S1_at--102--2211Chr04:35109255..35109279 (25 bp)
ACAAGGAAAGCAGCTGCATGCAGCA
LOC_Os04g59420
Os.12995.1.S1_at--630--4991Chr04:35109270..35109294 (25 bp)
GCATGCAGCATTGTGTTTTCTGTAA
LOC_Os04g59420
Os.12995.1.S1_at--239--9811Chr04:35109351..35109375 (25 bp)
TTAACTTGCAACTGGGAATGACGAG
LOC_Os04g59420
Os.12995.1.S1_at--126--3011Chr04:35109367..35109391 (25 bp)
AATGACGAGGTTTCTGCTCATCGAT
LOC_Os04g59420
Os.12995.1.S1_at--127--4831Chr04:35109382..35109406 (25 bp)
GCTCATCGATCTTGAACTTTGGCCA
LOC_Os04g59420
Os.12995.1.S1_at--325--2991Chr04:35109448..35109472 (25 bp)
AATGTTCATTCATGTACTTGTGTAA
LOC_Os04g59420
Target Sequence 
GCCATGCCTCTCAGCTAGGAGTAGCTTCTTACCTCCCTCACTCTCTTCACGTACTCTTAATCTCGTCGGATTGCTCTGAA
TATAGTAATACTCTTCATTTGTTTACTGTAACTACATGCATATTACTACCTAGTACTCCGTAGTAGTATATGATATGATA
TCCACGGAGGATCGGATTGGAGGTACATGTATATGGACTGACGAATGAATCACAGCTAGCAGACAAACAAGGAAAGCAGC
TGCATGCAGCATTGTGTTTTCTGTAATGTAATGCAGAGACATCGATCCATCTATCCGTCTCATCCATCTTCTTCTTGTTT
TTTTAACTTGCAACTGGGAATGACGAGGTTTCTGCTCATCGATCTTGAACTTTGGCCAAGATGGAAAAAAATGACTTGGA
GCTTGTGTGTAAATATCTGAATGTTCATTCATGTACTTGTGTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12995.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis