Browse Element(s) Details


Os.56150.1.S1_at

Description gb:AK109449.1
DB_XREF= gi:32994658
TID=Os.56150.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56150 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-113-A09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-113-A09, full insert sequence.
FL= gb:AK109449.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5943011/11B3 DNA binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g59390Os.35344.3.S1_x_at11/114+35084388..35090006transposon protein, putative, Mutator sub-class
LOC_Os04g59390Os.35344.18.S1_x_at9/114+35084388..35090006transposon protein, putative, Mutator sub-class
LOC_Os04g59390OsAffx.22940.5.S1_x_at3/114+35084388..35090006transposon protein, putative, Mutator sub-class
LOC_Os04g59400Os.12497.1.S1_at11/114+35098023..35104909expressed protein
LOC_Os04g59400OsAffx.26666.1.S1_x_at11/114+35098023..35104909expressed protein
LOC_Os04g59420Os.12995.1.S1_at11/114+35107944..35109540expressed protein
LOC_Os04g59430Os.56150.1.S1_at11/114+35110490..35114020B3 DNA binding domain containing protein, expressed
LOC_Os04g59440Os.175.1.S1_at11/114+35117992..35119114Photosystem II 22 kDa protein, chloroplast precursor, putative, expressed
LOC_Os04g59450Os.9298.1.S1_at11/114+35125261..35127167Serine/threonine-protein kinase SAPK5, putative, expressed
LOC_Os04g59460OsAffx.26667.1.S1_at11/114+35128041..35136553hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009733biological_processresponse to auxin stimulus
GO:0009850biological_processauxin metabolism
GO:0009908biological_processflower development
GO:0010158biological_processabaxial cell fate specification
GO:0045449biological_processregulation of transcription
GO:0048366biological_processleaf development
GO:0048527biological_processlateral root development
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56150.1.S1_at--1034--4451Chr04:35111758..35111782 (25 bp)
GCCTCTTTCTGCATCTGACGGAATG
LOC_Os04g59430
Os.56150.1.S1_at--155--1391Chr04:35111732..35111756 (25 bp)
AGACCATACAGCTGTTTGGCGTCAC
LOC_Os04g59430
Os.56150.1.S1_at--728--10871Chr04:35111717..35111741 (25 bp)
TTGGCGTCACAATAACATCACCTGT
LOC_Os04g59430
Os.56150.1.S1_at--929--2891Chr04:35111690..35111714 (25 bp)
AAGGAGACACCAATGGCGCTTTCGC
LOC_Os04g59430
Os.56150.1.S1_at--518--4571Chr04:35111675..35111699 (25 bp)
GCGCTTTCGCTTCAGCACAAGTGAA
LOC_Os04g59430
Os.56150.1.S1_at--401--8951Chr04:35111587..35111611 (25 bp)
TGACTCTCTTACCAATGGCCACAAT
LOC_Os04g59430
Os.56150.1.S1_at--97--8351Chr04:35110796..35110820 (25 bp)
GGCTGGACCAGATTTGTTTCTAACA
LOC_Os04g59430
Os.56150.1.S1_at--353--2531Chr04:35110686..35110710 (25 bp)
AACTATGCCGCATGGTCCAGTTAAG
LOC_Os04g59430
Os.56150.1.S1_at--156--1512Chr03:945885..945911 (25 bp)
AGCACTGCTCTGTTTTATTTTCCTT
NONE
Os.56150.1.S1_at--164--10751Chr04:35110586..35110610 (25 bp)
TTGAATTTTCACACCTGCACTTTGT
LOC_Os04g59430
Os.56150.1.S1_at--142--5451Chr04:35110506..35110530 (25 bp)
GAACCGTTGAACTCTGCTTTGCTGT
LOC_Os04g59430
Target Sequence 
GCCTCTTTCTGCATCTGACGGAATGAAGACCATACAGCTGTTTGGCGTCACAATAACATCACCTGTGCAAGGAGACACCA
ATGGCGCTTTCGCTTCAGCACAAGTGAATCAGGTTCCAGAGGGTGTAGATGATGAAACTGCTACCGAAGAAGCTTCTGAC
ACAAGCCTACCTGACTCTCTTACCAATGGCCACAATCAAGATGGTGCTAGGCTTTGAAGGAATATCCCATTAAACGTTTC
CAAGATATGGCTGGACCAGATTTGTTTCTAACATTTTGGTCTGTTCTGTTTCACCCTCCGGCAGTTTGACGGGATGTGGT
GTTCTTATGCATGCATTTAATCTGGAGTTTAGGCTGGCAACTATGCCGCATGGTCCAGTTAAGTTTGGAGTAATCTGGAG
AAACGTTCATTTCTTTGTTAGAATTGTTATAGAGCAGCACTGCTCTGTTTTATTTTCCTTGAATTTTCACACCTGCACTT
TGTTTGCTTGTTGTTTGTTTACCTGTATTGATCTGATAAACATCTTTAATTTCCTGGGGAACCGTTGAACTCTGCTTTGC
TGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56150.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis