Browse Element(s) Details


Os.6595.2.S1_s_at

Description gb:AK060612.1
DB_XREF= gi:32970630
TID=Os.6595.2
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6595 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein~predicted by GeneMark.hmm etc. (P0047B07.13), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-025-F03, full insert sequence.
FL= gb:AK060612.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5932010/11protein kinase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g59260Os.264.1.S1_at11/114+35026349..35027661Peroxidase family protein, expressed
LOC_Os04g59270OsAffx.9246.2.S1_at11/114+35028112..35029350hypothetical protein
LOC_Os04g59280Os.31312.2.S1_x_at4/114+35031419..35034674retrotransposon protein, putative, unclassified
LOC_Os04g59280Os.31312.5.S1_x_at4/114+35031419..35034674retrotransposon protein, putative, unclassified
LOC_Os04g59290OsAffx.22492.1.S1_x_at1/114+35035303..35041455retrotransposon protein, putative, unclassified
LOC_Os04g59290OsAffx.22492.1.S1_at1/114+35035303..35041455retrotransposon protein, putative, unclassified
LOC_Os04g59300OsAffx.14477.1.S1_at11/114+35045648..35047185hypothetical protein
LOC_Os04g59300OsAffx.31661.2.S1_at1/114+35045648..35047185hypothetical protein
LOC_Os04g59310Os.53827.1.S1_at11/114+35048224..35051178MAP3K-like protein kinase, putative, expressed
LOC_Os04g59320Os.54119.1.S1_at10/114+35051975..35057701protein kinase family protein, putative, expressed
LOC_Os04g59320Os.6595.2.S1_s_at10/114+35051975..35057701protein kinase family protein, putative, expressed
LOC_Os04g59330OsAffx.4214.1.S1_x_at11/114+35058615..35060079expressed protein
LOC_Os04g59330Os.8314.1.S1_at11/114+35058615..35060079expressed protein
LOC_Os04g59350OsAffx.14478.1.S1_at11/114+35060596..35061683hypothetical protein
LOC_Os04g59340Os.37570.1.S1_at11/114+35061587..35063617expressed protein
LOC_Os04g59340Os.37570.1.S1_s_at11/114+35061587..35063617expressed protein
LOC_Os04g59340Os.10647.2.S1_at7/114+35061587..35063617expressed protein
LOC_Os04g59360OsAffx.26665.1.S1_at11/114+35064131..35067101csAtPR5, putative
LOC_Os04g59370Os.51125.1.S1_at11/114+35068706..35070078Pathogenesis-related protein 5 precursor, putative, expressed
LOC_Os04g59380Os.257.1.S1_at11/114+35078601..35081273expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6595.2.S1_s_at--247--3851Chr04:35057092..35057116 (25 bp)
CTGCAGCCGCAGCATGTTACTTGAA
LOC_Os04g59320
Os.6595.2.S1_s_at--752--8151Chr04:35057140..35057164 (25 bp)
GGAAACCCTATGACTCCACGTCATT
LOC_Os04g59320
Os.6595.2.S1_s_at--805--7131Chr04:35057159..35057183 (25 bp)
GTCATTGCGGTTCACTTGTAGCCAT
LOC_Os04g59320
Os.6595.2.S1_s_at--242--9551Chr04:35057195..35057219 (25 bp)
TCTATCATATTCTTGAGGCCTCTCT
LOC_Os04g59320
Os.6595.2.S1_s_at--927--10711Chr04:35057207..35057231 (25 bp)
TTGAGGCCTCTCTGTTGCGTACGTG
LOC_Os04g59320
Os.6595.2.S1_s_at--576--6671Chr04:35057220..35057244 (25 bp)
GTTGCGTACGTGCTTTCACGGTGAA
LOC_Os04g59320
Os.6595.2.S1_s_at--98--10531Chr04:35057234..35057258 (25 bp)
TTCACGGTGAAGCAAGTCATAGCAT
LOC_Os04g59320
Os.6595.2.S1_s_at--309--7131Chr04:35057249..35057273 (25 bp)
GTCATAGCATCCGACTTATACCGAG
LOC_Os04g59320
Os.6595.2.S1_s_at--844--10411Chr04:35057264..35057288 (25 bp)
TTATACCGAGAGCAGCTTCTGGTGA
LOC_Os04g59320
Os.6595.2.S1_s_at--774--8551NONE
TGGAGGCAAAACCATGCATGCACAT
NONE
Os.6595.2.S1_s_at--1039--9731Chr04:35057468..35057492 (25 bp)
TAATTTTACCAGATCTGCTGTTCTG
LOC_Os04g59320
Target Sequence 
CTGCAGCCGCAGCATGTTACTTGAANGTGNCCAGGCTCACTCTCCGCCGGAAACCCTATGACTCCACGTCATTGCGGTTC
ACTTGTAGCCATGAAATTTTTGCTCTATCATATTCTTGAGGCCTCTCTGTTGCGTACGTGCTTTCACGGTGAAGCAAGTC
ATAGCATCCGACTTATACCGAGAGCAGCTTCTGGTGAAAATTAAGTTTTGGTGAGAGTGAATTGGCAGATGGTATGATGT
GCAATTTGCTGCTGTNNNNCTNGTGTAGTGTNGGTTGGNNNNNTTGGNTGTNGGCAAAGTCAGAAGCCAGANANNGCGAA
GACTACTGTTATTATTGGTTGATACTGGAGGCAAAACCATGCATGCACATACTATTATATGGTGTTGCAGATTAATTTTA
CCAGATCTGCTGTTCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6595.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis