Browse Element(s) Details


Os.10647.2.S1_at

Description gb:AK060898.1
DB_XREF= gi:32970916
TID=Os.10647.2
CNT=14
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.10647 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023012N03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-035-D03, full insert sequence.
FL= gb:AK060898.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0240011/11expressed protein
LOC_Os04g593407/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g02360Os.47738.1.S1_at11/119+968784..970670Cyclin, N-terminal domain containing protein, expressed
LOC_Os09g02370OsAffx.29687.1.S1_at10/119+978181..980195hypothetical protein
LOC_Os09g02370OsAffx.14332.1.S1_x_at2/119+978181..980195hypothetical protein
LOC_Os09g02380OsAffx.17532.1.S1_x_at11/119+981778..982332hypothetical protein
LOC_Os09g02390Os.57352.1.S1_at4/119+986487..986860hypothetical protein
LOC_Os09g02400Os.10647.2.S1_at11/119+992257..994621expressed protein
LOC_Os09g02400Os.37570.1.S1_s_at11/119+992257..994621expressed protein
LOC_Os09g02410OsAffx.29688.1.S1_at11/119+995050..996725D-mannose binding lectin family protein
LOC_Os09g02410Os.27556.1.S1_at2/119+995050..996725D-mannose binding lectin family protein
LOC_Os09g02420NANA9+1000951..1002281expressed protein
LOC_Os09g02430NANA9+1003701..1003943hypothetical protein
LOC_Os09g02440Os.56058.1.S1_at11/119+1005810..1011534DCL protein, chloroplast precursor, putative, expressed
LOC_Os09g02450NANA9+1014115..1014456hypothetical protein
LOC_Os09g02460OsAffx.22947.5.S1_x_at1/119+1017949..1021957retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10647.2.S1_at--567--6252Chr04:35063348..35063372 (25 bp)
GATGGTTACCATAAGTATGTCTTAA
LOC_Os04g59340
Os.10647.2.S1_at--168--3131Chr09:992609..992633 (25 bp)
AATTTATATGGTGAAGCCTGCTTAA
LOC_Os09g02400
Os.10647.2.S1_at--591--7771Chr09:992600..992624 (25 bp)
GGTGAAGCCTGCTTAATTACCAAGC
LOC_Os09g02400
Os.10647.2.S1_at--1108--5412Chr04:35063383..35063407 (25 bp)
GAAGCCTGCTTAATTACCAAGCATT
LOC_Os04g59340
Os.10647.2.S1_at--148--9992Chr04:35063397..35063421 (25 bp)
TACCAAGCATTGAACTGTGCTGTCG
LOC_Os04g59340
Os.10647.2.S1_at--1031--3592Chr04:35063404..35063428 (25 bp)
CATTGAACTGTGCTGTCGTATACTA
LOC_Os04g59340
Os.10647.2.S1_at--102--8992Chr04:35063407..35063430 (24 bp)
TGAACTGTGCTGTCGTATACTAGAG
LOC_Os04g59340
Os.10647.2.S1_at--1002--1952Chr04:35063410..35063435 (25 bp)
ACTGTGCTGTCGTATACTAGAGCTG
LOC_Os04g59340
Os.10647.2.S1_at--129--331Chr09:992557..992581 (25 bp)
ATACTAGAGCTGATGCATTTCTTGC
LOC_Os09g02400
Os.10647.2.S1_at--754--4951Chr09:992543..992567 (25 bp)
GCATTTCTTGCTTAGTTTCAGAGAC
LOC_Os09g02400
Os.10647.2.S1_at--985--9572Chr04:35063443..35063467 (25 bp)
TCTTGCTTAGTTTCAGAGACTCGTG
LOC_Os04g59340
Target Sequence 
GATGGTTACCATAAGTATGTCTTAATTTATATGGTGAAGCCTGCTTAATTACCAAGCATTGAACTGTGCTGTCGTATACT
AGAGCTGATGCATTTCTTGCTTAGTTTCAGAGACTCGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10647.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis