Browse Element(s) Details


Os.47738.1.S1_at

Description gb:AK103499.1
DB_XREF= gi:32988708
TID=Os.47738.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.47738 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033131B09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033131B09, full insert sequence.
FL= gb:AK103499.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0236011/11Cyclin, N-terminal domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g02310OsAffx.29683.1.S1_at10/119+946473..947054hypothetical protein
LOC_Os09g02320OsAffx.10222.1.S1_x_at1/119+952032..953641hypothetical protein
LOC_Os09g02330OsAffx.17531.1.S1_at11/119+956941..957726hypothetical protein
LOC_Os09g02340OsAffx.29685.1.S1_at9/119+959331..961386hypothetical protein
LOC_Os09g02350OsAffx.29686.1.S1_at11/119+966405..966752hypothetical protein
LOC_Os09g02360Os.47738.1.S1_at11/119+968784..970670Cyclin, N-terminal domain containing protein, expressed
LOC_Os09g02370OsAffx.29687.1.S1_at10/119+978181..980195hypothetical protein
LOC_Os09g02370OsAffx.14332.1.S1_x_at2/119+978181..980195hypothetical protein
LOC_Os09g02380OsAffx.17532.1.S1_x_at11/119+981778..982332hypothetical protein
LOC_Os09g02390Os.57352.1.S1_at4/119+986487..986860hypothetical protein
LOC_Os09g02400Os.10647.2.S1_at11/119+992257..994621expressed protein
LOC_Os09g02400Os.37570.1.S1_s_at11/119+992257..994621expressed protein
LOC_Os09g02410OsAffx.29688.1.S1_at11/119+995050..996725D-mannose binding lectin family protein
LOC_Os09g02410Os.27556.1.S1_at2/119+995050..996725D-mannose binding lectin family protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0000074biological_processregulation of progression through cell cycle
GO:0000080biological_processG1 phase of mitotic cell cycle
GO:0009735biological_processresponse to cytokinin stimulus
GO:0009741biological_processresponse to brassinosteroid stimulus
GO:0009744biological_processresponse to sucrose stimulus
GO:0005634cellular_componentnucleus
GO:0004693molecular_functioncyclin-dependent protein kinase activity
GO:0005515molecular_functionprotein binding
GO:0016538molecular_functioncyclin-dependent protein kinase regulator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47738.1.S1_at--605--6991Chr09:969249..969273 (25 bp)
GTACGCCGCATGAGGCTGCTCTGGT
LOC_Os09g02360
Os.47738.1.S1_at--187--6291Chr09:969149..969173 (25 bp)
GATGTTCCATTAACGCAATGCAAGA
LOC_Os09g02360
Os.47738.1.S1_at--959--7671Chr09:969110..969134 (25 bp)
GGGTAGGTTCATTCATGTAGCCATT
LOC_Os09g02360
Os.47738.1.S1_at--1052--9711Chr09:969052..969076 (25 bp)
TCAACCCACCATAGCCATGGATGGA
LOC_Os09g02360
Os.47738.1.S1_at--334--2751Chr09:969020..969044 (25 bp)
AAGAAGCTGTTTTGTCCTGTCTGCT
LOC_Os09g02360
Os.47738.1.S1_at--591--8711Chr09:969003..969027 (25 bp)
TGTCTGCTCACTCTGCTGGTACCAC
LOC_Os09g02360
Os.47738.1.S1_at--1139--8771Chr09:968975..968999 (25 bp)
TGTTAGAACCATGCTTCACACTCTC
LOC_Os09g02360
Os.47738.1.S1_at--693--371Chr09:968871..968895 (25 bp)
ATCAAATGCTGCAATTGCCCACTTC
LOC_Os09g02360
Os.47738.1.S1_at--825--4531Chr09:968855..968879 (25 bp)
GCCCACTTCCCATGAGCAGCTAGAG
LOC_Os09g02360
Os.47738.1.S1_at--987--4851Chr09:968837..968861 (25 bp)
GCTAGAGCTACAACAGCAGACCTGA
LOC_Os09g02360
Os.47738.1.S1_at--122--1391Chr09:968820..968844 (25 bp)
AGACCTGAGGCTATTGTGCTCACCT
LOC_Os09g02360
Target Sequence 
GTACGCCGCATGAGGCTGCTCTGGTCGGTATCGGGAAGGGGAGAAGCTAAAGCAAGCCACTAATTAAGCTTAGGAGGAGG
AGGGTTCAGTCCAAGAAAAAGATGTTCCATTAACGCAATGCAAGAATGCAGGTGCGAAGNNNGGGTAGGTTCATTCATGT
AGCCATTGATGGTCTCTTGGAGCTCAGCTCAGCCTCAACCTCAACCCACCATAGCCATGGATGGAGGTGAGGAAGAAGCT
GTTTTGTCCTGTCTGCTCACTCTGCTGGTACCACCNCTGTTAGAACCATGCTTCACACTCTCTCTCTTGTTTCTCTCTCT
AGAGAGAAGAGAGAGAGTATAAAGGAGTAGGAGTATGAGGAGTGGCAACAATGGCAATGGCATCAAATGCTGCAATTGCC
CACTTCCCATGAGCAGCTAGAGCTACAACAGCAGACCTGAGGCTATTGTGCTCACCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47738.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis