Browse Element(s) Details


OsAffx.29685.1.S1_at

Description tigr:9637.m00076
TID=OsAffx.29685.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g023409/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g02300Os.47346.1.A1_x_at11/119+936054..937276expressed protein
LOC_Os09g02310OsAffx.29683.1.S1_at10/119+946473..947054hypothetical protein
LOC_Os09g02320OsAffx.10222.1.S1_x_at1/119+952032..953641hypothetical protein
LOC_Os09g02330OsAffx.17531.1.S1_at11/119+956941..957726hypothetical protein
LOC_Os09g02340OsAffx.29685.1.S1_at9/119+959331..961386hypothetical protein
LOC_Os09g02350OsAffx.29686.1.S1_at11/119+966405..966752hypothetical protein
LOC_Os09g02360Os.47738.1.S1_at11/119+968784..970670Cyclin, N-terminal domain containing protein, expressed
LOC_Os09g02370OsAffx.29687.1.S1_at10/119+978181..980195hypothetical protein
LOC_Os09g02370OsAffx.14332.1.S1_x_at2/119+978181..980195hypothetical protein
LOC_Os09g02380OsAffx.17532.1.S1_x_at11/119+981778..982332hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29685.1.S1_at--601--911Chr09:961319..961343 (25 bp)
AGGCTGGCCCCTACATGCTACACTA
LOC_Os09g02340
OsAffx.29685.1.S1_at--1099--2091Chr09:961307..961331 (25 bp)
ACATGCTACACTACTACAGCCACAA
LOC_Os09g02340
OsAffx.29685.1.S1_at--266--9911Chr09:961296..961320 (25 bp)
TACTACAGCCACAACCCACAGGAAA
LOC_Os09g02340
OsAffx.29685.1.S1_at--1122--4391Chr09:961289..961313 (25 bp)
GCCACAACCCACAGGAAAATCAGAA
LOC_Os09g02340
OsAffx.29685.1.S1_at--267--2451Chr09:961274..961298 (25 bp)
AAAATCAGAACAAGCTTTTTGCTAC
LOC_Os09g02340
OsAffx.29685.1.S1_at--69--10371Chr09:961259..961283 (25 bp)
TTTTTGCTACAAAAATCAGCACAAG
LOC_Os09g02340
OsAffx.29685.1.S1_at--1076--111NONE
ATCAGCACAAGTCTAACTAGTTTGC
NONE
OsAffx.29685.1.S1_at--1139--5111NONE
GCACAAGTCTAACTAGTTTGCTAGT
NONE
OsAffx.29685.1.S1_at--457--3711Chr09:960082..960106 (25 bp)
CTAGTTTGCTAGTTGAAGTGGAAAA
LOC_Os09g02340
OsAffx.29685.1.S1_at--1144--1511Chr09:960055..960079 (25 bp)
ACTTAAGGCCTAGAAATAATTGTGG
LOC_Os09g02340
OsAffx.29685.1.S1_at--862--5711Chr09:960029..960053 (25 bp)
GACTCTGATGTGTGTAGGTTTTGTT
LOC_Os09g02340
Target Sequence 
AGGCTGGCCCCTACATGCTACACTACTACAGCCACAACCCACAGGAAAATCAGAACAAGCTTTTTGCTACAAAAATCAGC
ACAAGTCTAACTAGTTTGCTAGTTGAAGTGGAAAACAACTTAAGGCCTAGAAATAATTGTGGGGACTCTGATGTGTGTAG
GTTTTGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29685.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis