Browse Element(s) Details


Os.47346.1.A1_x_at

Description gb:AK069507.1
DB_XREF= gi:32979531
TID=Os.47346.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.47346 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023019M23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023019M23, full insert sequence.
FL= gb:AK069507.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0230011/11expressed protein
LOC_Os08g355601/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g02260OsAffx.6152.1.S1_at11/119+914398..916958pentatricopeptide, putative, expressed
LOC_Os09g02270Os.9823.1.S1_at11/119+919575..925013cyclase family protein, putative, expressed
LOC_Os09g02284OsAffx.17530.1.S1_s_at11/119+926068..933049DNA-directed RNA polymerase II 36 kDa polypeptide A, putative, expressed
LOC_Os09g02284Os.5510.1.S1_at11/119+926068..933049DNA-directed RNA polymerase II 36 kDa polypeptide A, putative, expressed
LOC_Os09g02284OsAffx.17530.1.S1_at1/119+926068..933049DNA-directed RNA polymerase II 36 kDa polypeptide A, putative, expressed
LOC_Os09g02300Os.47346.1.A1_x_at11/119+936054..937276expressed protein
LOC_Os09g02310OsAffx.29683.1.S1_at10/119+946473..947054hypothetical protein
LOC_Os09g02320OsAffx.10222.1.S1_x_at1/119+952032..953641hypothetical protein
LOC_Os09g02330OsAffx.17531.1.S1_at11/119+956941..957726hypothetical protein
LOC_Os09g02340OsAffx.29685.1.S1_at9/119+959331..961386hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47346.1.A1_x_at--614--5572Chr08:22270977..22270996 (20 bp)
GAAAGTGGTGGTGATGCCGCCGCTG
LOC_Os08g35560
Os.47346.1.A1_x_at--1034--9171Chr09:936533..936566 (25 bp)
TGCCGCACCGGCATGGAGCACAGCA
LOC_Os09g02300
Os.47346.1.A1_x_at--176--3031Chr09:936495..936519 (25 bp)
AATGCCGTCGGACGGCCGCGTCAAT
LOC_Os09g02300
Os.47346.1.A1_x_at--102--1951Chr09:936484..936508 (25 bp)
ACGGCCGCGTCAATGCCGTCGGACG
LOC_Os09g02300
Os.47346.1.A1_x_at--858--10691Chr09:936427..936451 (25 bp)
TTGCCGGTGGGTTCTTCGCGTAGCC
LOC_Os09g02300
Os.47346.1.A1_x_at--1043--8611Chr09:936420..936444 (25 bp)
TGGGTTCTTCGCGTAGCCGTCGCCG
LOC_Os09g02300
Os.47346.1.A1_x_at--588--4491Chr09:936399..936423 (25 bp)
GCCGTCGCCGTTGCTGGTGGGAGAA
LOC_Os09g02300
Os.47346.1.A1_x_at--850--5871Chr09:936226..936250 (25 bp)
GAGCGGTGGAAGTAGCGATTTTTCT
LOC_Os09g02300
Os.47346.1.A1_x_at--708--7711Chr09:936222..936246 (25 bp)
GGTGGAAGTAGCGATTTTTCTGGTT
LOC_Os09g02300
Os.47346.1.A1_x_at--998--7331Chr09:936189..936213 (25 bp)
TGGGACCTACCGCAAAAAAAATGAT
LOC_Os09g02300
Os.47346.1.A1_x_at--261--8811Chr09:936107..936131 (25 bp)
TGACCGGCTGTCCCGGTTTTCTAAG
LOC_Os09g02300
Target Sequence 
GAAAGTGGTGGTGATGCCGCCGCTGCCGCACCGGCATGGAGCACAGCACGGCGGCCGCGTCAATGCCGTCGGACGGCCGC
GTCAATGCCGTCGGACGCCGCTCCCCTCTTCTTTGCGTCGCCGTCGCCGTTGCCGGTGGGTTCTTCGCGTAGCCGTCGCC
GTCGCCGTTGCTGGTGGGAGAAGAGGGGGCGGGGCATCCGCCGCCGTGCGCNGCCGNTGGAAGNGTGAGGAGAGNGNTGG
AGTAGTNGTCNCCGTGCNCCGCCGTGGGAGAGGACACAGAGGAGGGCGCGGGGAGTCGGCGCCGTGGGAGGAGGACGGAG
AGAAGGACGAAGGAGCGGTGGAAGTAGCGATTTTTCTGGTTNTTTTATGGTGGGACCTACCGCAAAAAAAATGATGGNNN
NNTAGACCCCATCTGATTTTTTTTATGTACGACGGTAGAACGNTCCACCGGCTCGGTTGACCGGCTGTCCCGGTTTTCTA
AG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47346.1.A1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis