Browse Element(s) Details


Os.9823.1.S1_at

Description gb:AK061798.1
DB_XREF= gi:32971816
TID=Os.9823.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.9823 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013038J19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-039-G11, full insert sequence.
FL= gb:AK061798.1 gb:AK098934.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0227011/11cyclase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g02240NANA9+899864..900142hypothetical protein
LOC_Os09g02250Os.54641.1.S1_at11/119+905903..908918transposon protein, putative, unclassified, expressed
LOC_Os09g02250Os.26787.2.S1_x_at1/119+905903..908918transposon protein, putative, unclassified, expressed
LOC_Os09g02250Os.41315.1.S1_x_at1/119+905903..908918transposon protein, putative, unclassified, expressed
LOC_Os09g02260OsAffx.6152.1.S1_at11/119+914398..916958pentatricopeptide, putative, expressed
LOC_Os09g02270Os.9823.1.S1_at11/119+919575..925013cyclase family protein, putative, expressed
LOC_Os09g02284OsAffx.17530.1.S1_s_at11/119+926068..933049DNA-directed RNA polymerase II 36 kDa polypeptide A, putative, expressed
LOC_Os09g02284Os.5510.1.S1_at11/119+926068..933049DNA-directed RNA polymerase II 36 kDa polypeptide A, putative, expressed
LOC_Os09g02284OsAffx.17530.1.S1_at1/119+926068..933049DNA-directed RNA polymerase II 36 kDa polypeptide A, putative, expressed
LOC_Os09g02300Os.47346.1.A1_x_at11/119+936054..937276expressed protein
LOC_Os09g02310OsAffx.29683.1.S1_at10/119+946473..947054hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9823.1.S1_at--353--5891Chr09:921309..921333 (25 bp)
GAGCGTTTGATGAATGCATTCCTGC
LOC_Os09g02270
Os.9823.1.S1_at--786--4931Chr09:921294..921318 (25 bp)
GCATTCCTGCTCATTTAGTTTTTCT
LOC_Os09g02270
Os.9823.1.S1_at--1107--5951Chr09:919995..920017 (23 bp)
GAGAAGTCATCCTTGTGGAAGCCTT
LOC_Os09g02270
Os.9823.1.S1_at--522--5231Chr09:919947..919971 (25 bp)
GAATATATACCTTGCATTGCTTGCC
LOC_Os09g02270
Os.9823.1.S1_at--213--4931Chr09:919934..919958 (25 bp)
GCATTGCTTGCCACTAAGGTTACGT
LOC_Os09g02270
Os.9823.1.S1_at--232--7491Chr09:919911..919935 (25 bp)
GTGGTTCTGAAGGTTCCCCGGCAAG
LOC_Os09g02270
Os.9823.1.S1_at--222--6711Chr09:919899..919923 (25 bp)
GTTCCCCGGCAAGATGTATTCTCAT
LOC_Os09g02270
Os.9823.1.S1_at--260--7091Chr09:919802..919826 (25 bp)
GTCAAGTCAGATGCATCCACCTAGG
LOC_Os09g02270
Os.9823.1.S1_at--180--6431Chr09:919718..919742 (25 bp)
GATCATGTTGCCTTCTAACAGGTTA
LOC_Os09g02270
Os.9823.1.S1_at--269--2991Chr09:919694..919718 (25 bp)
AATGTCTGTGCATCTATCAGCTATA
LOC_Os09g02270
Os.9823.1.S1_at--831--231Chr09:919622..919646 (25 bp)
ATATATGACACCAATGCTACCTCCG
LOC_Os09g02270
Target Sequence 
GAGCGTTTGATGAATGCATTCCTGCTCATTTAGTTTTTCTTGAGAAAAGAGAAGTCATCCTTGTGGAAGCCTTANATTTA
GAGCATGTTACCCCAGGAATATATACCTTGCATTGCTTGCCACTAAGGTTACGTGGTTCTGAAGGTTCCCCGGCAAGATG
TATTCTCATCAAGTAACATATGCTTATAAGGTTTACATCGACATCTTATATGTGTTGAAATGTTGAATGGTGTTGATGGT
TGTCAAGTCAGATGCATCCACCTAGGACNTATGTATATGACAAACTATGCATAGTATTTGACACATATATATGATTGTAA
AATAAGATCATGTTGCCTTCTAACAGGTTAATGTCTGTGCATCTATCAGCTATAAACTTATATATATTACTATTGTAATT
GACTACCAATGTAACAGTTGGATATATGACACCAATGCTACCTCCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9823.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis