Browse Element(s) Details


OsAffx.6152.1.S1_at

Description tigr:9637.m00069
TID=OsAffx.6152.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0226011/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g02230OsAffx.6151.1.S1_at10/119+892123..893709hypothetical protein
LOC_Os09g02240NANA9+899864..900142hypothetical protein
LOC_Os09g02250Os.54641.1.S1_at11/119+905903..908918transposon protein, putative, unclassified, expressed
LOC_Os09g02250Os.26787.2.S1_x_at1/119+905903..908918transposon protein, putative, unclassified, expressed
LOC_Os09g02250Os.41315.1.S1_x_at1/119+905903..908918transposon protein, putative, unclassified, expressed
LOC_Os09g02260OsAffx.6152.1.S1_at11/119+914398..916958pentatricopeptide, putative, expressed
LOC_Os09g02270Os.9823.1.S1_at11/119+919575..925013cyclase family protein, putative, expressed
LOC_Os09g02284OsAffx.17530.1.S1_s_at11/119+926068..933049DNA-directed RNA polymerase II 36 kDa polypeptide A, putative, expressed
LOC_Os09g02284Os.5510.1.S1_at11/119+926068..933049DNA-directed RNA polymerase II 36 kDa polypeptide A, putative, expressed
LOC_Os09g02284OsAffx.17530.1.S1_at1/119+926068..933049DNA-directed RNA polymerase II 36 kDa polypeptide A, putative, expressed
LOC_Os09g02300Os.47346.1.A1_x_at11/119+936054..937276expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6152.1.S1_at--1058--10371Chr09:915148..915172 (25 bp)
TTTTGCAGAGCGGTAGCTCCCCGAG
LOC_Os09g02260
OsAffx.6152.1.S1_at--626--4791Chr09:915133..915157 (25 bp)
GCTCCCCGAGTTTGTCAATCTACAA
LOC_Os09g02260
OsAffx.6152.1.S1_at--914--9511Chr09:915115..915139 (25 bp)
TCTACAATTCTATGATGAGATCGCT
LOC_Os09g02260
OsAffx.6152.1.S1_at--414--6931Chr09:915088..915112 (25 bp)
GTAGGATGAAGAAATTGTCGCAAGC
LOC_Os09g02260
OsAffx.6152.1.S1_at--964--8711Chr09:915073..915097 (25 bp)
TGTCGCAAGCAATCAACCTCTGGTT
LOC_Os09g02260
OsAffx.6152.1.S1_at--566--8571Chr09:915053..915077 (25 bp)
TGGTTGGATTACCTGCCAAAAAAGT
LOC_Os09g02260
OsAffx.6152.1.S1_at--771--7351Chr09:915010..915034 (25 bp)
GTGAAGTACTTGCTAATGCCCACAA
LOC_Os09g02260
OsAffx.6152.1.S1_at--1079--10671Chr09:915001..915025 (25 bp)
TTGCTAATGCCCACAAAGAAATTGA
LOC_Os09g02260
OsAffx.6152.1.S1_at--561--6751Chr09:914911..914935 (25 bp)
GTTCAAACCCTTATACCATTTGGCT
LOC_Os09g02260
OsAffx.6152.1.S1_at--25--3591Chr09:914895..914919 (25 bp)
CATTTGGCTAATTGGGCTTTGTCAG
LOC_Os09g02260
OsAffx.6152.1.S1_at--735--8631Chr09:914883..914907 (25 bp)
TGGGCTTTGTCAGGTAAGGAGAACT
LOC_Os09g02260
Target Sequence 
TTTTGCAGAGCGGTAGCTCCCCGAGTTTGTCAATCTACAATTCTATGATGAGATCGCTATGTAGGATGAAGAAATTGTCG
CAAGCAATCAACCTCTGGTTGGATTACCTGCCAAAAAAGTACAATTTCCCAGTGGAGAGTGAAGTACTTGCTAATGCCCA
CAAAGAAATTGAAGATGGTTCCCTGGATGATGGAGTAAGGGAGTTAATCAAGATAGATCAAGAATATGGTTATATTAGTT
CAAACCCTTATACCATTTGGCTAATTGGGCTTTGTCAGGTAAGGAGAACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6152.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis