Browse Element(s) Details


Os.41315.1.S1_x_at

Description gb:D24997
DB_XREF= gi:428841
DB_XREF=RICR2916A
CLONE=R2916_1A
TID=Os.41315.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.41315 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) receptor-like protein kinase (P0704D04.28), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4229411/11Leucine Rich Repeat family protein, expressed
LOC_Os05g510703/11Leucine Rich Repeat family protein, expressed
LOC_Os09g022501/11transposon protein, putative, unclassified, expressed
LOC_Os03g504501/11atypical receptor-like kinase MARK, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g42270OsAffx.11436.2.S1_at11/111+24279648..24289792Single-stranded DNA binding protein, SSDP containing protein
LOC_Os01g42270OsAffx.11436.1.S1_x_at10/111+24279648..24289792Single-stranded DNA binding protein, SSDP containing protein
LOC_Os01g42270OsAffx.21385.1.S1_at1/111+24279648..24289792Single-stranded DNA binding protein, SSDP containing protein
LOC_Os01g42280Os.21178.1.S1_at11/111+24296605..24299158pentatricopeptide, putative, expressed
LOC_Os01g42280Os.21178.1.S2_at11/111+24296605..24299158pentatricopeptide, putative, expressed
LOC_Os01g42294Os.41315.1.S1_x_at11/111+24303225..24308635Leucine Rich Repeat family protein, expressed
LOC_Os01g42310OsAffx.23633.1.S1_at11/111+24328389..24329818hypothetical protein
LOC_Os01g42310OsAffx.10222.1.S1_x_at1/111+24328389..24329818hypothetical protein
LOC_Os01g42310OsAffx.30217.1.S1_x_at1/111+24328389..24329818hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.41315.1.S1_x_at--733--5751Chr01:24307628..24307652 (25 bp)
GACGGGCATGACGTCGTCGTCCAAG
LOC_Os01g42294
Os.41315.1.S1_x_at--392--8931Chr01:24307620..24307644 (25 bp)
TGACGTCGTCGTCCAAGGAGGACAT
LOC_Os01g42294
Os.41315.1.S1_x_at--2--4252Chr05:29225116..29225136 (21 bp)
CCGGGTACAGCTTCGACCTGGAGGA
LOC_Os05g51070
Os.41315.1.S1_x_at--1051--6992Chr05:29225116..29225136 (21 bp)
GTACAGCTTCGACCTGGAGGACCTG
LOC_Os05g51070
Os.41315.1.S1_x_at--241--3652Chr03:28747105..28747128 (24 bp)
CTTCGACCTGGAGGACCTGCTGCGG
LOC_Os03g50450
Os.41315.1.S1_x_at--29--5371Chr01:24307397..24307421 (25 bp)
GAAGCGGCTCAAGGACGTGGCGGTG
LOC_Os01g42294
Os.41315.1.S1_x_at--478--8392Chr09:907510..907529 (20 bp)
GGCGCGAGTTCGACGCCCACATGGA
LOC_Os09g02250
Os.41315.1.S1_x_at--719--4151Chr01:24307355..24307379 (25 bp)
CGCCCACATGGACGCGCTCGGCAAG
LOC_Os01g42294
Os.41315.1.S1_x_at--733--4131Chr01:24307341..24307365 (25 bp)
CGCTCGGCAAGGTGGAGCACCGCAA
LOC_Os01g42294
Os.41315.1.S1_x_at--474--9431Chr01:24307338..24307362 (25 bp)
TCGGCAAGGTGGAGCACCGCAACGT
LOC_Os01g42294
Os.41315.1.S1_x_at--829--4152Chr05:29225326..29225347 (22 bp)
CGCCTACTACTTCTCCAAGGACGAG
LOC_Os05g51070
Target Sequence 
GACGGGCATGACGTCGTCGTCCAAGGAGGACATGGGCGGCGCGTCCGGGTCGGCCGCGGCGGCGGTGGCGGCGGTGGCGG
CGGAGCCGAGCAGGCTGGTGTTCGTGGGGAAGGGGGCCGGGTACAGCTTCGACCTGGAGGACCTGCTGCGGGCGTCGGCG
GAGGTGCTCGGGAAGGGGAGCGTGGGGACGTCGTACAAGGCGGTGCTGGAGGAAGGGACGACGGTGGTGGTGAAGCGGCT
CAAGGACGTGGCGGTGGCGCGGCGCGAGTTCGACGCCCACATGGACGCGCTCGGCAAGGTGGAGCACCGCAACGTCNTCC
CNGTCCGCGCCTACTACTTCTCCAAGGACGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.41315.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis