Browse Element(s) Details


OsAffx.11436.2.S1_at

Description tigr:9629.m04050
TID=OsAffx.11436.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4227011/11Single-stranded DNA binding protein, SSDP containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g42234Os.8825.2.S1_x_at11/111+24250566..24260297amino acid permease family protein, putative, expressed
LOC_Os01g42234Os.8825.3.S1_at11/111+24250566..24260297amino acid permease family protein, putative, expressed
LOC_Os01g42234Os.8825.3.S1_x_at11/111+24250566..24260297amino acid permease family protein, putative, expressed
LOC_Os01g42234Os.8825.1.S1_a_at11/111+24250566..24260297amino acid permease family protein, putative, expressed
LOC_Os01g42250Os.56120.1.S1_at11/111+24260996..24264077ubiquitin, putative, expressed
LOC_Os01g42250Os.8825.4.S1_x_at9/111+24260996..24264077ubiquitin, putative, expressed
LOC_Os01g42250Os.8825.4.S1_at5/111+24260996..24264077ubiquitin, putative, expressed
LOC_Os01g42260Os.7109.1.S1_a_at11/111+24265217..24276734Single-stranded DNA binding protein, SSDP containing protein, expressed
LOC_Os01g42270OsAffx.11436.2.S1_at11/111+24279648..24289792Single-stranded DNA binding protein, SSDP containing protein
LOC_Os01g42270OsAffx.11436.1.S1_x_at10/111+24279648..24289792Single-stranded DNA binding protein, SSDP containing protein
LOC_Os01g42270OsAffx.21385.1.S1_at1/111+24279648..24289792Single-stranded DNA binding protein, SSDP containing protein
LOC_Os01g42280Os.21178.1.S1_at11/111+24296605..24299158pentatricopeptide, putative, expressed
LOC_Os01g42280Os.21178.1.S2_at11/111+24296605..24299158pentatricopeptide, putative, expressed
LOC_Os01g42294Os.41315.1.S1_x_at11/111+24303225..24308635Leucine Rich Repeat family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009908biological_processflower development
GO:0016481biological_processnegative regulation of transcription
GO:0005634cellular_componentnucleus
GO:0005515molecular_functionprotein binding
GO:0016564molecular_functiontranscriptional repressor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11436.2.S1_at--698--8971Chr01:24280824..24280847 (24 bp)
TGAACTGTGTTAGGGTATTTAATGG
LOC_Os01g42270
OsAffx.11436.2.S1_at--975--7671Chr01:24280708..24280835 (25 bp)
GGGTATTTAATGGAGGTGCTATTCA
LOC_Os01g42270
OsAffx.11436.2.S1_at--83--7611Chr01:24280154..24280178 (25 bp)
GGGCACTTAAAGAATATCCATTCAG
LOC_Os01g42270
OsAffx.11436.2.S1_at--161--1471Chr01:24280144..24280168 (25 bp)
AGAATATCCATTCAGTTTGCTGGGA
LOC_Os01g42270
OsAffx.11436.2.S1_at--645--9231Chr01:24280138..24280162 (25 bp)
TCCATTCAGTTTGCTGGGATGCTAC
LOC_Os01g42270
OsAffx.11436.2.S1_at--439--131Chr01:24280135..24280159 (25 bp)
ATTCAGTTTGCTGGGATGCTACGGG
LOC_Os01g42270
OsAffx.11436.2.S1_at--294--7931Chr01:24280122..24280146 (25 bp)
GGATGCTACGGGTGGCTACCTAGCC
LOC_Os01g42270
OsAffx.11436.2.S1_at--180--8311Chr01:24280109..24280133 (25 bp)
GGCTACCTAGCCTCTGTTAGTGAAG
LOC_Os01g42270
OsAffx.11436.2.S1_at--436--1751Chr01:24280105..24280129 (25 bp)
ACCTAGCCTCTGTTAGTGAAGATTC
LOC_Os01g42270
OsAffx.11436.2.S1_at--1076--4451Chr01:24280100..24280124 (25 bp)
GCCTCTGTTAGTGAAGATTCTATCA
LOC_Os01g42270
OsAffx.11436.2.S1_at--783--6571Chr01:24279866..24280109 (25 bp)
GATTCTATCAAGTCTTTGGAGCTGT
LOC_Os01g42270
Target Sequence 
TGAACTGTGTTAGGGTATTTAATGGAGGTGCTATTCAGTTGAGATTTCAACCTCACCATGGGAAATATCTTGCAGTTGTC
TCAGAAAAGATGATTTCCATACTAGATGCAGAAACGCTGCACATTTATAGGAGTGATCTACAGGGGCACTTAAAGAATAT
CCATTCAGTTTGCTGGGATGCTACGGGTGGCTACCTAGCCTCTGTTAGTGAAGATTCTATCAAGTCTTTGGAGCTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11436.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis