Browse Element(s) Details


Os.7109.1.S1_a_at

Description gb:AK101152.1
DB_XREF= gi:32986361
TID=Os.7109.1
CNT=38
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.7109 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative flower development regulator, LEUNI protein (P0704D04.22), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033027C19, full insert sequence.
FL= gb:AK101152.1 gb:AK105049.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4226011/11Single-stranded DNA binding protein, SSDP containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g42200Os.54424.1.S1_at11/111+24241013..24241704expressed protein
LOC_Os01g42210OsAffx.23631.1.S1_at9/111+24246206..24247977hypothetical protein
LOC_Os01g42220NANA1+24249192..24249710hypothetical protein
LOC_Os01g42234Os.8825.2.S1_x_at11/111+24250566..24260297amino acid permease family protein, putative, expressed
LOC_Os01g42234Os.8825.3.S1_at11/111+24250566..24260297amino acid permease family protein, putative, expressed
LOC_Os01g42234Os.8825.3.S1_x_at11/111+24250566..24260297amino acid permease family protein, putative, expressed
LOC_Os01g42234Os.8825.1.S1_a_at11/111+24250566..24260297amino acid permease family protein, putative, expressed
LOC_Os01g42250Os.56120.1.S1_at11/111+24260996..24264077ubiquitin, putative, expressed
LOC_Os01g42250Os.8825.4.S1_x_at9/111+24260996..24264077ubiquitin, putative, expressed
LOC_Os01g42250Os.8825.4.S1_at5/111+24260996..24264077ubiquitin, putative, expressed
LOC_Os01g42260Os.7109.1.S1_a_at11/111+24265217..24276734Single-stranded DNA binding protein, SSDP containing protein, expressed
LOC_Os01g42270OsAffx.11436.2.S1_at11/111+24279648..24289792Single-stranded DNA binding protein, SSDP containing protein
LOC_Os01g42270OsAffx.11436.1.S1_x_at10/111+24279648..24289792Single-stranded DNA binding protein, SSDP containing protein
LOC_Os01g42270OsAffx.21385.1.S1_at1/111+24279648..24289792Single-stranded DNA binding protein, SSDP containing protein
LOC_Os01g42280Os.21178.1.S1_at11/111+24296605..24299158pentatricopeptide, putative, expressed
LOC_Os01g42280Os.21178.1.S2_at11/111+24296605..24299158pentatricopeptide, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009908biological_processflower development
GO:0016481biological_processnegative regulation of transcription
GO:0005634cellular_componentnucleus
GO:0005515molecular_functionprotein binding
GO:0016564molecular_functiontranscriptional repressor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7109.1.S1_a_at--24--5231Chr01:24265890..24265914 (25 bp)
GAATATTCACTCACTTTGTTGGGAT
LOC_Os01g42260
Os.7109.1.S1_a_at--921--111Chr01:24265867..24265891 (25 bp)
ATTCTACCGGTGACAATCTGGCTTC
LOC_Os01g42260
Os.7109.1.S1_a_at--392--5611Chr01:24265856..24265880 (25 bp)
GACAATCTGGCTTCTGTCAGTGAAG
LOC_Os01g42260
Os.7109.1.S1_a_at--1116--1451Chr01:24265823..24265847 (25 bp)
AGAATATGGTCGTTTGCTCCTGGAC
LOC_Os01g42260
Os.7109.1.S1_a_at--752--10271Chr01:24265811..24265835 (25 bp)
TTTGCTCCTGGACATGACGGTGAAT
LOC_Os01g42260
Os.7109.1.S1_a_at--416--3211Chr01:24265758..24265782 (25 bp)
CAAGTTCCAGTCATGCGTTTTTCAC
LOC_Os01g42260
Os.7109.1.S1_a_at--215--4871Chr01:24265606..24265630 (25 bp)
TCTTTGGAACTCTGGGACATTAGGG
LOC_Os01g42260
Os.7109.1.S1_a_at--433--2751Chr01:24265579..24265603 (25 bp)
AAGAACGCCATGACGGTCCACAGTG
LOC_Os01g42260
Os.7109.1.S1_a_at--290--3971Chr01:24265566..24265590 (25 bp)
CGGTCCACAGTGCTCATGATGGTTT
LOC_Os01g42260
Os.7109.1.S1_a_at--502--10431Chr01:24265543..24265567 (25 bp)
TTAGTTGCAGCGCTAGCAGCATCGA
LOC_Os01g42260
Os.7109.1.S1_a_at--527--10811Chr01:24265349..24265373 (25 bp)
TTGTACCGTGTATGCTGCTCTATTA
LOC_Os01g42260
Target Sequence 
GAATATTCACTCACTTTGTTGGGATTCTACCGGTGACAATCTGGCTTCTGTCAGTGAAGATAGTGTCAGAATATGGTCGT
TTGCTCCTGGACATGACGGTGAATTTGTGAATGAGTTGAGTTGCAGCGGGAACAAGTTCCAGTCATGCGTTTTTCACCCC
TCTTACCCATATTTGCTAGTAATTGGATGCTACGAGTCTTTGGAACTCTGGGACATTAGGGAGAAGAACGCCATGACGGT
CCACAGTGCTCATGATGGTTTAGTTGCAGCGCTAGCAGCATCGAGCGCAACAGGCAAGGTTGCCTCAGTAAGCCATGATA
GGTTTGTCAAGCTCTGGAAATGACTTGCTCCAGGTGACCACATGACANAAAGAGGGTAGCTAACANNAAAAAAAAAAATC
TTGAACCGCTTTGGGTGCAAGAACTAACCTGGTTTGTGTTTTGTGGTTGTCTTCAGTTGTACCGTGTATGCTGCTCTATT
A

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7109.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis