Browse Element(s) Details


OsAffx.23631.1.S1_at

Description tigr:9629.m04043
TID=OsAffx.23631.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g422109/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g42160Os.34600.2.S1_at11/111+24223784..24224216hypothetical protein
LOC_Os01g42160Os.34600.2.S1_x_at11/111+24223784..24224216hypothetical protein
LOC_Os01g42170NANA1+24230316..24235220Zinc knuckle family protein
LOC_Os01g42190Os.35808.1.S1_at11/111+24238365..24240087DnaJ domain containing protein, expressed
LOC_Os01g42200Os.54424.1.S1_at11/111+24241013..24241704expressed protein
LOC_Os01g42210OsAffx.23631.1.S1_at9/111+24246206..24247977hypothetical protein
LOC_Os01g42220NANA1+24249192..24249710hypothetical protein
LOC_Os01g42234Os.8825.2.S1_x_at11/111+24250566..24260297amino acid permease family protein, putative, expressed
LOC_Os01g42234Os.8825.3.S1_at11/111+24250566..24260297amino acid permease family protein, putative, expressed
LOC_Os01g42234Os.8825.3.S1_x_at11/111+24250566..24260297amino acid permease family protein, putative, expressed
LOC_Os01g42234Os.8825.1.S1_a_at11/111+24250566..24260297amino acid permease family protein, putative, expressed
LOC_Os01g42250Os.56120.1.S1_at11/111+24260996..24264077ubiquitin, putative, expressed
LOC_Os01g42250Os.8825.4.S1_x_at9/111+24260996..24264077ubiquitin, putative, expressed
LOC_Os01g42250Os.8825.4.S1_at5/111+24260996..24264077ubiquitin, putative, expressed
LOC_Os01g42260Os.7109.1.S1_a_at11/111+24265217..24276734Single-stranded DNA binding protein, SSDP containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0031225cellular_componentanchored to membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23631.1.S1_at--943--9571Chr01:24246615..24246635 (21 bp)
TCTTCGCCGACACGTGCCGAGCAGA
LOC_Os01g42210
OsAffx.23631.1.S1_at--490--7291NONE
GTGCCGAGCAGACCTCAAGTCACTG
NONE
OsAffx.23631.1.S1_at--991--1151Chr01:24247297..24247321 (25 bp)
AGTCACTGCCAGAGATGCGTTTCCT
LOC_Os01g42210
OsAffx.23631.1.S1_at--758--1331Chr01:24247307..24247331 (25 bp)
AGAGATGCGTTTCCTACCTGACCCA
LOC_Os01g42210
OsAffx.23631.1.S1_at--1137--9211NONE
TCCAGCTGCCGTCCCAGGATCAATG
NONE
OsAffx.23631.1.S1_at--457--8691Chr01:24247866..24247890 (25 bp)
TGTGCCGCCACAGGACCGGTCTGGA
LOC_Os01g42210
OsAffx.23631.1.S1_at--1105--5811Chr01:24247879..24247903 (25 bp)
GACCGGTCTGGATCGGAGACCTCAA
LOC_Os01g42210
OsAffx.23631.1.S1_at--93--6011Chr01:24247894..24247918 (25 bp)
GAGACCTCAACTCCCAGCCGGAATT
LOC_Os01g42210
OsAffx.23631.1.S1_at--315--1991Chr01:24247903..24247927 (25 bp)
ACTCCCAGCCGGAATTTCCTTGTGG
LOC_Os01g42210
OsAffx.23631.1.S1_at--47--9251Chr01:24247919..24247943 (25 bp)
TCCTTGTGGTGTTGTTAGCCCTAAC
LOC_Os01g42210
OsAffx.23631.1.S1_at--526--8671Chr01:24247923..24247947 (25 bp)
TGTGGTGTTGTTAGCCCTAACAGCA
LOC_Os01g42210
Target Sequence 
TCTTCGCCGACACGTGCCGAGCAGACCTCAAGTCACTGCCAGAGATGCGTTTCCTACCTGACCCACCTCCCACGCCAACA
ATTTCTCCAGCTGCCGTCCCAGGATCAATGCCCCCGACGACGGAGGAGCGTTCGACGCCCGTGCCTGTGCCGCCACAGGA
CCGGTCTGGATCGGAGACCTCAACTCCCAGCCGGAATTTCCTTGTGGTGTTGTTAGCCCTAACAGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23631.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis