Browse Element(s) Details


Os.35808.1.S1_at

Description gb:AK065697.1
DB_XREF= gi:32975715
TID=Os.35808.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.35808 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) heat shock protein-like (P0704D04.17), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013037L21, full insert sequence.
FL= gb:AK065697.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4219011/11DnaJ domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g42140OsAffx.21381.1.S1_s_at11/111+24213693..24215035expressed protein
LOC_Os01g42150Os.13930.1.S1_at11/111+24216974..24217559expressed protein
LOC_Os01g42150Os.34600.2.S1_x_at4/111+24216974..24217559expressed protein
LOC_Os01g42160Os.34600.2.S1_at11/111+24223784..24224216hypothetical protein
LOC_Os01g42160Os.34600.2.S1_x_at11/111+24223784..24224216hypothetical protein
LOC_Os01g42170NANA1+24230316..24235220Zinc knuckle family protein
LOC_Os01g42190Os.35808.1.S1_at11/111+24238365..24240087DnaJ domain containing protein, expressed
LOC_Os01g42200Os.54424.1.S1_at11/111+24241013..24241704expressed protein
LOC_Os01g42210OsAffx.23631.1.S1_at9/111+24246206..24247977hypothetical protein
LOC_Os01g42220NANA1+24249192..24249710hypothetical protein
LOC_Os01g42234Os.8825.2.S1_x_at11/111+24250566..24260297amino acid permease family protein, putative, expressed
LOC_Os01g42234Os.8825.3.S1_at11/111+24250566..24260297amino acid permease family protein, putative, expressed
LOC_Os01g42234Os.8825.3.S1_x_at11/111+24250566..24260297amino acid permease family protein, putative, expressed
LOC_Os01g42234Os.8825.1.S1_a_at11/111+24250566..24260297amino acid permease family protein, putative, expressed
LOC_Os01g42250Os.56120.1.S1_at11/111+24260996..24264077ubiquitin, putative, expressed
LOC_Os01g42250Os.8825.4.S1_x_at9/111+24260996..24264077ubiquitin, putative, expressed
LOC_Os01g42250Os.8825.4.S1_at5/111+24260996..24264077ubiquitin, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
GO:0005634cellular_componentnucleus
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.35808.1.S1_at--479--4451Chr01:24239659..24239683 (25 bp)
GCCTTCTCCAGCTACTGAGATCAAT
LOC_Os01g42190
Os.35808.1.S1_at--181--6051Chr01:24239675..24239699 (25 bp)
GAGATCAATTTTTGCCAGCGGCCGC
LOC_Os01g42190
Os.35808.1.S1_at--390--4111Chr01:24239697..24239721 (25 bp)
CGCAACATCATCACCTGCATAGATT
LOC_Os01g42190
Os.35808.1.S1_at--72--291Chr01:24239715..24239739 (25 bp)
ATAGATTAGCTAGCCTCGTCGACAT
LOC_Os01g42190
Os.35808.1.S1_at--789--1631Chr01:24239802..24239826 (25 bp)
AGCGTCGTGATCTCATGAAGGTGCA
LOC_Os01g42190
Os.35808.1.S1_at--622--7131Chr01:24239882..24239906 (25 bp)
GTCTTGTTTCGATGGGATGGGCTCT
LOC_Os01g42190
Os.35808.1.S1_at--357--4811Chr01:24239902..24239926 (25 bp)
GCTCTGCAGCGAGAACTGTCTATAC
LOC_Os01g42190
Os.35808.1.S1_at--267--331Chr01:24239923..24239947 (25 bp)
ATACTGTTCCGAGTGTACCGTGACA
LOC_Os01g42190
Os.35808.1.S1_at--902--8831Chr01:24239951..24239975 (25 bp)
TGATATCACGGGACTGTTTGCCTTT
LOC_Os01g42190
Os.35808.1.S1_at--506--6851Chr01:24239966..24239990 (25 bp)
GTTTGCCTTTGTACAGTTTCATGAT
LOC_Os01g42190
Os.35808.1.S1_at--866--8851Chr01:24240033..24240057 (25 bp)
TGATGATCGTCGTTGTTCCGTTCTG
LOC_Os01g42190
Target Sequence 
GCCTTCTCCAGCTACTGAGATCAATTTTTGCCAGCGGCCGCAACATCATCACCTGCATAGATTAGCTAGCCTCGTCGACA
TCGAGTGAGAGTGAGTAGTCGGCGGCGGTGCGGCGCCGCCCCCTGCTGCCGATGAGGCGCGTCAGCGTCGTGATCTCATG
AAGGTGCATGCAGAAAGGTGGCAAGGCAGGGCACTGGAACAAAGTATTTCTGTTTATTTTCTTGTCTTGTTTCGATGGGA
TGGGCTCTGCAGCGAGAACTGTCTATACTGTTCCGAGTGTACCGTGACAATGTGATATCACGGGACTGTTTGCCTTTGTA
CAGTTTCATGATAAACAATCTGAAGTAGTAGTAATGAACTAGTGACAATGATGATGATGATCGTCGTTGTTCCGTTCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.35808.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis