Browse Element(s) Details


Os.8825.1.S1_a_at

Description gb:AK105656.1
DB_XREF= gi:32990865
TID=Os.8825.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8825 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative amino acid or GABA permease (P0704D04.21), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-200-G07, full insert sequence.
FL= gb:AK105656.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4223411/11amino acid permease family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g42170NANA1+24230316..24235220Zinc knuckle family protein
LOC_Os01g42190Os.35808.1.S1_at11/111+24238365..24240087DnaJ domain containing protein, expressed
LOC_Os01g42200Os.54424.1.S1_at11/111+24241013..24241704expressed protein
LOC_Os01g42210OsAffx.23631.1.S1_at9/111+24246206..24247977hypothetical protein
LOC_Os01g42220NANA1+24249192..24249710hypothetical protein
LOC_Os01g42234Os.8825.2.S1_x_at11/111+24250566..24260297amino acid permease family protein, putative, expressed
LOC_Os01g42234Os.8825.3.S1_at11/111+24250566..24260297amino acid permease family protein, putative, expressed
LOC_Os01g42234Os.8825.3.S1_x_at11/111+24250566..24260297amino acid permease family protein, putative, expressed
LOC_Os01g42234Os.8825.1.S1_a_at11/111+24250566..24260297amino acid permease family protein, putative, expressed
LOC_Os01g42250Os.56120.1.S1_at11/111+24260996..24264077ubiquitin, putative, expressed
LOC_Os01g42250Os.8825.4.S1_x_at9/111+24260996..24264077ubiquitin, putative, expressed
LOC_Os01g42250Os.8825.4.S1_at5/111+24260996..24264077ubiquitin, putative, expressed
LOC_Os01g42260Os.7109.1.S1_a_at11/111+24265217..24276734Single-stranded DNA binding protein, SSDP containing protein, expressed
LOC_Os01g42270OsAffx.11436.2.S1_at11/111+24279648..24289792Single-stranded DNA binding protein, SSDP containing protein
LOC_Os01g42270OsAffx.11436.1.S1_x_at10/111+24279648..24289792Single-stranded DNA binding protein, SSDP containing protein
LOC_Os01g42270OsAffx.21385.1.S1_at1/111+24279648..24289792Single-stranded DNA binding protein, SSDP containing protein

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Gene Ontology Classification
GO idTypeName
GO:0015359molecular_functionamino acid permease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8825.1.S1_a_at--63--1651Chr01:24259925..24259949 (25 bp)
AGCGCCAGGCACTGGTTCAAAGGCC
LOC_Os01g42234
Os.8825.1.S1_a_at--558--931Chr01:24259931..24259955 (25 bp)
AGGCACTGGTTCAAAGGCCCCATCA
LOC_Os01g42234
Os.8825.1.S1_a_at--390--391Chr01:24259952..24259976 (25 bp)
ATCACCAACCTCGATGGCTAGCTAA
LOC_Os01g42234
Os.8825.1.S1_a_at--656--2631Chr01:24259958..24259982 (25 bp)
AACCTCGATGGCTAGCTAAGCCAAG
LOC_Os01g42234
Os.8825.1.S1_a_at--908--7851Chr01:24260000..24260024 (25 bp)
GGTTTTCGCCGGTGGATATGGAAAT
LOC_Os01g42234
Os.8825.1.S1_a_at--1074--9451Chr01:24260113..24260137 (25 bp)
TCTGGAAGGGAAACGGGAGCATATC
LOC_Os01g42234
Os.8825.1.S1_a_at--1047--2571Chr01:24260124..24260148 (25 bp)
AACGGGAGCATATCATGTCATGGTG
LOC_Os01g42234
Os.8825.1.S1_a_at--781--7491Chr01:24260149..24260173 (25 bp)
GTGGTGTTGTGATTAGTTGTTGATT
LOC_Os01g42234
Os.8825.1.S1_a_at--1128--6731Chr01:24260175..24260199 (25 bp)
GTTCAGCGAAATTATATTACGTGGA
LOC_Os01g42234
Os.8825.1.S1_a_at--466--7671Chr01:24260202..24260226 (25 bp)
GGGATTATACATTTTATACACTGGT
LOC_Os01g42234
Os.8825.1.S1_a_at--1044--10171Chr01:24260216..24260240 (25 bp)
TATACACTGGTTGTAGATTGACAAT
LOC_Os01g42234
Target Sequence 
AGCGCCAGGCACTGGTTCAAAGGCCCCATCACCAACCTCGATGGCTAGCTAAGCCAAGATTGAGGTTTTGGTTTTGGTTT
TCGCCGGTGGATATGGAAATGCNGTGGGAGATGGAAGAATCGTCGTCGATGATCGGAGGCGTTTCAGGTGGGAGGAGAAG
TATAACTGAAGAACAGGTAAGAAGATGATCTGGAAGGGAAACGGGAGCATATCATGTCATGGTGGTGGTGTTGTGATTAG
TTGTTGATTTGTTCAGCGAAATTATATTACGTGGAAGGGGATTATACATTTTATACACTGGTTGTAGATTGACAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8825.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis