Browse Element(s) Details


Os.54424.1.S1_at

Description gb:AK105136.1
DB_XREF= gi:32990345
TID=Os.54424.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54424 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-102-A11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-102-A11, full insert sequence.
FL= gb:AK105136.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4220011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g42150Os.13930.1.S1_at11/111+24216974..24217559expressed protein
LOC_Os01g42150Os.34600.2.S1_x_at4/111+24216974..24217559expressed protein
LOC_Os01g42160Os.34600.2.S1_at11/111+24223784..24224216hypothetical protein
LOC_Os01g42160Os.34600.2.S1_x_at11/111+24223784..24224216hypothetical protein
LOC_Os01g42170NANA1+24230316..24235220Zinc knuckle family protein
LOC_Os01g42190Os.35808.1.S1_at11/111+24238365..24240087DnaJ domain containing protein, expressed
LOC_Os01g42200Os.54424.1.S1_at11/111+24241013..24241704expressed protein
LOC_Os01g42210OsAffx.23631.1.S1_at9/111+24246206..24247977hypothetical protein
LOC_Os01g42220NANA1+24249192..24249710hypothetical protein
LOC_Os01g42234Os.8825.2.S1_x_at11/111+24250566..24260297amino acid permease family protein, putative, expressed
LOC_Os01g42234Os.8825.3.S1_at11/111+24250566..24260297amino acid permease family protein, putative, expressed
LOC_Os01g42234Os.8825.3.S1_x_at11/111+24250566..24260297amino acid permease family protein, putative, expressed
LOC_Os01g42234Os.8825.1.S1_a_at11/111+24250566..24260297amino acid permease family protein, putative, expressed
LOC_Os01g42250Os.56120.1.S1_at11/111+24260996..24264077ubiquitin, putative, expressed
LOC_Os01g42250Os.8825.4.S1_x_at9/111+24260996..24264077ubiquitin, putative, expressed
LOC_Os01g42250Os.8825.4.S1_at5/111+24260996..24264077ubiquitin, putative, expressed
LOC_Os01g42260Os.7109.1.S1_a_at11/111+24265217..24276734Single-stranded DNA binding protein, SSDP containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54424.1.S1_at--483--3771Chr01:24241472..24241496 (25 bp)
CTCTCGTCGCGCTTGGTCGTCGTCT
LOC_Os01g42200
Os.54424.1.S1_at--748--7131Chr01:24241499..24241523 (25 bp)
GTCTTGCTCGTGTCCGGCCTAATGC
LOC_Os01g42200
Os.54424.1.S1_at--963--9752Chr01:24241518..24241542 (25 bp)
TAATGCCACTGCTCGTGTAGTCGTG
LOC_Os01g42200
Os.54424.1.S1_at--1056--6931Chr01:24241534..24241558 (25 bp)
GTAGTCGTGTGATCGTGTCTCCTGT
LOC_Os01g42200
Os.54424.1.S1_at--139--7151Chr01:24241550..24241574 (25 bp)
GTCTCCTGTGTTTTCGTTTAGTACG
LOC_Os01g42200
Os.54424.1.S1_at--734--4151Chr01:24241586..24241610 (25 bp)
CGCGCCGAAGTTTCGCGGCCTGCGA
LOC_Os01g42200
Os.54424.1.S1_at--154--4611Chr01:24241607..24241631 (25 bp)
GCGACTTTGCGACCGCAGCATATGT
LOC_Os01g42200
Os.54424.1.S1_at--994--3571Chr01:24241625..24241649 (25 bp)
CATATGTTGCGGCTGTCACGTTTAC
LOC_Os01g42200
Os.54424.1.S1_at--104--7091Chr01:24241639..24241663 (25 bp)
GTCACGTTTACTGATTTGGCATGTA
LOC_Os01g42200
Os.54424.1.S1_at--879--6551Chr01:24241669..24241693 (25 bp)
GATTACAACTGTATCGCGTCAACAC
LOC_Os01g42200
Os.54424.1.S1_at--642--6871Chr01:24241679..24241703 (25 bp)
GTATCGCGTCAACACGTTTCAAGTT
LOC_Os01g42200
Target Sequence 
CTCTCGTCGCGCTTGGTCGTCGTCTCCGTCTTGCTCGTGTCCGGCCTAATGCCACTGCTCGTGTAGTCGTGTGATCGTGT
CTCCTGTGTTTTCGTTTAGTACGGCCGGGCCGACCGCGCCGAAGTTTCGCGGCCTGCGACTTTGCGACCGCAGCATATGT
TGCGGCTGTCACGTTTACTGATTTGGCATGTAAATAAGATTACAACTGTATCGCGTCAACACGTTTCAAGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54424.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis