Browse Element(s) Details


Os.8825.4.S1_x_at

Description gb:NM_192705.1
DB_XREF= gi:34912493
GEN=P0704D04.21
TID=Os.8825.4
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.8825 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative amino acid or GABA permease (P0704D04.21), mRNA.
PROD=putative amino acid or GABA permease
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g422509/11ubiquitin, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g42190Os.35808.1.S1_at11/111+24238365..24240087DnaJ domain containing protein, expressed
LOC_Os01g42200Os.54424.1.S1_at11/111+24241013..24241704expressed protein
LOC_Os01g42210OsAffx.23631.1.S1_at9/111+24246206..24247977hypothetical protein
LOC_Os01g42220NANA1+24249192..24249710hypothetical protein
LOC_Os01g42234Os.8825.2.S1_x_at11/111+24250566..24260297amino acid permease family protein, putative, expressed
LOC_Os01g42234Os.8825.3.S1_at11/111+24250566..24260297amino acid permease family protein, putative, expressed
LOC_Os01g42234Os.8825.3.S1_x_at11/111+24250566..24260297amino acid permease family protein, putative, expressed
LOC_Os01g42234Os.8825.1.S1_a_at11/111+24250566..24260297amino acid permease family protein, putative, expressed
LOC_Os01g42250Os.56120.1.S1_at11/111+24260996..24264077ubiquitin, putative, expressed
LOC_Os01g42250Os.8825.4.S1_x_at9/111+24260996..24264077ubiquitin, putative, expressed
LOC_Os01g42250Os.8825.4.S1_at5/111+24260996..24264077ubiquitin, putative, expressed
LOC_Os01g42260Os.7109.1.S1_a_at11/111+24265217..24276734Single-stranded DNA binding protein, SSDP containing protein, expressed
LOC_Os01g42270OsAffx.11436.2.S1_at11/111+24279648..24289792Single-stranded DNA binding protein, SSDP containing protein
LOC_Os01g42270OsAffx.11436.1.S1_x_at10/111+24279648..24289792Single-stranded DNA binding protein, SSDP containing protein
LOC_Os01g42270OsAffx.21385.1.S1_at1/111+24279648..24289792Single-stranded DNA binding protein, SSDP containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8825.4.S1_x_at--416--2851Chr01:24261766..24261790 (25 bp)
AAGTCCACTGTCACGGACGAATCAG
LOC_Os01g42250
Os.8825.4.S1_x_at--596--8071Chr01:24261810..24261834 (25 bp)
GGAGCTGAGGTATAAACCTGTGCAT
LOC_Os01g42250
Os.8825.4.S1_x_at--745--2371NONE
AAACCTGTGCATGGTTCCATTCTAT
NONE
Os.8825.4.S1_x_at--1139--4991NONE
GCATGGTTCCATTCTATTACAGAAG
NONE
Os.8825.4.S1_x_at--270--1251Chr01:24263068..24263092 (25 bp)
AGTTGGCTCAAACTGCTAGGCAAAA
LOC_Os01g42250
Os.8825.4.S1_x_at--368--5611Chr01:24263130..24263154 (25 bp)
GACAAGTCACCTGAACGACACGAAG
LOC_Os01g42250
Os.8825.4.S1_x_at--137--8131Chr01:24263193..24263217 (25 bp)
GGACATCACCAGTTTCGGTTATACA
LOC_Os01g42250
Os.8825.4.S1_x_at--51--2831Chr01:24263551..24263575 (25 bp)
AAGTTTGGCAAGCTTTTTAGGGCAT
LOC_Os01g42250
Os.8825.4.S1_x_at--206--5311Chr01:24263583..24263607 (25 bp)
GAAGGTTAATCTCAGCGTCGCAGAC
LOC_Os01g42250
Os.8825.4.S1_x_at--57--7231Chr01:24263599..24263623 (25 bp)
GTCGCAGACCTGACATTTGCATTCG
LOC_Os01g42250
Os.8825.4.S1_x_at--1024--2331Chr01:24263645..24263669 (25 bp)
AAAGCACACCAGAGGACCTTGGCCT
LOC_Os01g42250
Target Sequence 
AAGTCCACTGTCACGGACGAATCAGAGCAGAGCAGCGTATTGAAGGAGCTGAGGTATAAACCTGTGCATGGTTCCATTCT
ATTACAGAAGCAAGCAATGGCGAAATTTGCTGAATCAGCTGATGATTTTCTGGAGAAGTTGGCTCAAACTGCTAGGCAAA
AGGTTGAGGCCAGAATACCAACTGAACATATAGATCTAGACAAGTCACCTGAACGACACGAAGCAAGAGAAAAGGTGGTC
GTAACAGTTCAGGACAAAGCTGGACATCACCAGTTTCGGTTATACAAGGATGAGAAGTTTGGCAAGCTTTTTAGGGCATA
TGCTAAGAAGGTTAATCTCAGCGTCGCAGACCTGACATTTGCATTCGATGGTGACAAAGTTGACGCAGAAAGCACACCAG
AGGACCTTGGCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8825.4.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis