Browse Element(s) Details


Os.8825.3.S1_x_at

Description gb:CF326451
DB_XREF= gi:33801155
DB_XREF=JMT1--06-B15.g1
CLONE=JMT1--06-B15
TID=Os.8825.3
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.8825 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative amino acid or GABA permease (P0704D04.21), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4223411/11amino acid permease family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g42170NANA1+24230316..24235220Zinc knuckle family protein
LOC_Os01g42190Os.35808.1.S1_at11/111+24238365..24240087DnaJ domain containing protein, expressed
LOC_Os01g42200Os.54424.1.S1_at11/111+24241013..24241704expressed protein
LOC_Os01g42210OsAffx.23631.1.S1_at9/111+24246206..24247977hypothetical protein
LOC_Os01g42220NANA1+24249192..24249710hypothetical protein
LOC_Os01g42234Os.8825.2.S1_x_at11/111+24250566..24260297amino acid permease family protein, putative, expressed
LOC_Os01g42234Os.8825.3.S1_at11/111+24250566..24260297amino acid permease family protein, putative, expressed
LOC_Os01g42234Os.8825.3.S1_x_at11/111+24250566..24260297amino acid permease family protein, putative, expressed
LOC_Os01g42234Os.8825.1.S1_a_at11/111+24250566..24260297amino acid permease family protein, putative, expressed
LOC_Os01g42250Os.56120.1.S1_at11/111+24260996..24264077ubiquitin, putative, expressed
LOC_Os01g42250Os.8825.4.S1_x_at9/111+24260996..24264077ubiquitin, putative, expressed
LOC_Os01g42250Os.8825.4.S1_at5/111+24260996..24264077ubiquitin, putative, expressed
LOC_Os01g42260Os.7109.1.S1_a_at11/111+24265217..24276734Single-stranded DNA binding protein, SSDP containing protein, expressed
LOC_Os01g42270OsAffx.11436.2.S1_at11/111+24279648..24289792Single-stranded DNA binding protein, SSDP containing protein
LOC_Os01g42270OsAffx.11436.1.S1_x_at10/111+24279648..24289792Single-stranded DNA binding protein, SSDP containing protein
LOC_Os01g42270OsAffx.21385.1.S1_at1/111+24279648..24289792Single-stranded DNA binding protein, SSDP containing protein

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Gene Ontology Classification
GO idTypeName
GO:0015359molecular_functionamino acid permease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8825.3.S1_x_at--293--1611Chr01:24250747..24250771 (25 bp)
AGCTGAGGCTGCTCGGCTACGAGCC
LOC_Os01g42234
Os.8825.3.S1_x_at--50--9111Chr01:24251777..24251801 (25 bp)
TGCTGTCCAACTTCGCGGTGTCGTT
LOC_Os01g42234
Os.8825.3.S1_x_at--751--2511Chr01:24251785..24251809 (25 bp)
AACTTCGCGGTGTCGTTCTCGATCG
LOC_Os01g42234
Os.8825.3.S1_x_at--870--10571Chr01:24251800..24251824 (25 bp)
TTCTCGATCGTGTCGGTGCTGACGG
LOC_Os01g42234
Os.8825.3.S1_x_at--476--4091Chr01:24251870..24251894 (25 bp)
CGACGATGGTGTACGGCTGGCCCAT
LOC_Os01g42234
Os.8825.3.S1_x_at--401--7551Chr01:24251963..24251987 (25 bp)
GTGGCCTCTACTTCTGGAGCGCGAG
LOC_Os01g42234
Os.8825.3.S1_x_at--1022--9451Chr01:24251975..24251999 (25 bp)
TCTGGAGCGCGAGGCTCTGCAGCCA
LOC_Os01g42234
Os.8825.3.S1_x_at--670--8311Chr01:24252026..24252050 (25 bp)
GGCTCACCGGCTGGTAAGTATCAGA
LOC_Os01g42234
Os.8825.3.S1_x_at--883--9771Chr01:24252040..24252064 (25 bp)
TAAGTATCAGAGTACCTCCCTTTCT
LOC_Os01g42234
Os.8825.3.S1_x_at--716--9312Chr02:94180..94231 (25 bp)
TCCCTTTCTGCGTGTTTGTTTACTA
NONE
Os.8825.3.S1_x_at--388--7431Chr01:24252067..24252091 (25 bp)
GTGTTTGTTTACTAAGCACTCCATA
LOC_Os01g42234
Target Sequence 
AGCTGAGGCTGCTCGGCTACGAGCCGCAGCTCAAGCGCAACCTCTCGCTGCTGTCCAACTTCGCGGTGTCGTTCTCGATC
GTGTCGGTGCTGACGGGGATCACGACGCTGTTCGGGACGGGGCTGCAGTTCGGCGGGCCGGCGACGATGGTGTACGGCTG
GCCCATCGCCGGCGCCATGACGCTCGTCGTCGGCCTCGCCATGGCCGAGATCTGCTCCGCCTACCCGACCTCCGGTGGCC
TCTACTTCTGGAGCGCGAGGCTCTGCAGCCACCGCCGCTGGGGCCCCTTCGCTTCATGGCTCACCGGCTGGTAAGTATCA
GAGTACCTCCCTTTCTGCGTGTTTGTTTACTAAGCACTCCATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8825.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis