Browse Element(s) Details


Os.56120.1.S1_at

Description gb:AK109289.1
DB_XREF= gi:32994498
TID=Os.56120.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56120 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-188-C07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-188-C07, full insert sequence.
FL= gb:AK109289.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4225011/11ubiquitin, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g42190Os.35808.1.S1_at11/111+24238365..24240087DnaJ domain containing protein, expressed
LOC_Os01g42200Os.54424.1.S1_at11/111+24241013..24241704expressed protein
LOC_Os01g42210OsAffx.23631.1.S1_at9/111+24246206..24247977hypothetical protein
LOC_Os01g42220NANA1+24249192..24249710hypothetical protein
LOC_Os01g42234Os.8825.2.S1_x_at11/111+24250566..24260297amino acid permease family protein, putative, expressed
LOC_Os01g42234Os.8825.3.S1_at11/111+24250566..24260297amino acid permease family protein, putative, expressed
LOC_Os01g42234Os.8825.3.S1_x_at11/111+24250566..24260297amino acid permease family protein, putative, expressed
LOC_Os01g42234Os.8825.1.S1_a_at11/111+24250566..24260297amino acid permease family protein, putative, expressed
LOC_Os01g42250Os.56120.1.S1_at11/111+24260996..24264077ubiquitin, putative, expressed
LOC_Os01g42250Os.8825.4.S1_x_at9/111+24260996..24264077ubiquitin, putative, expressed
LOC_Os01g42250Os.8825.4.S1_at5/111+24260996..24264077ubiquitin, putative, expressed
LOC_Os01g42260Os.7109.1.S1_a_at11/111+24265217..24276734Single-stranded DNA binding protein, SSDP containing protein, expressed
LOC_Os01g42270OsAffx.11436.2.S1_at11/111+24279648..24289792Single-stranded DNA binding protein, SSDP containing protein
LOC_Os01g42270OsAffx.11436.1.S1_x_at10/111+24279648..24289792Single-stranded DNA binding protein, SSDP containing protein
LOC_Os01g42270OsAffx.21385.1.S1_at1/111+24279648..24289792Single-stranded DNA binding protein, SSDP containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56120.1.S1_at--856--2751Chr01:24263726..24263750 (25 bp)
AAGACACGCTCAGTTTTGGGTGCCC
LOC_Os01g42250
Os.56120.1.S1_at--224--3751Chr01:24263751..24263775 (25 bp)
CTCACTGGGACGTTGTTGGTAACTT
LOC_Os01g42250
Os.56120.1.S1_at--232--10211Chr01:24263787..24263811 (25 bp)
TATTTTTTGCTTGCGCTTTAGCTCC
LOC_Os01g42250
Os.56120.1.S1_at--1006--7211Chr01:24263817..24263841 (25 bp)
GTCCCAGCTGTTCTAAAGAGCCGTT
LOC_Os01g42250
Os.56120.1.S1_at--224--1371Chr01:24263833..24263857 (25 bp)
AGAGCCGTTGGTGTCTATATCCATA
LOC_Os01g42250
Os.56120.1.S1_at--346--751Chr01:24263877..24263901 (25 bp)
ATGTATGTAGACGATAGCCTGCCCC
LOC_Os01g42250
Os.56120.1.S1_at--712--9991Chr01:24263891..24263915 (25 bp)
TAGCCTGCCCCAATTTTATGAATCG
LOC_Os01g42250
Os.56120.1.S1_at--154--9011Chr01:24263909..24263933 (25 bp)
TGAATCGATGTTTTTCCTTTTGCCA
LOC_Os01g42250
Os.56120.1.S1_at--410--9571Chr01:24263936..24263960 (25 bp)
TCTTCTTTTCTCTTGGCTTTGTGAA
LOC_Os01g42250
Os.56120.1.S1_at--526--391Chr01:24263964..24263988 (25 bp)
ATCACGAGCGTGACTGCTTTTATTG
LOC_Os01g42250
Os.56120.1.S1_at--1078--7451Chr01:24263992..24264016 (25 bp)
GTGTGCGTCCAATTGTTTGTACTCT
LOC_Os01g42250
Target Sequence 
AAGACACGCTCAGTTTTGGGTGCCCCTCACTGGGACGTTGTTGGTAACTTCGGATGGTTATTATTTTTTGCTTGCGCTTT
AGCTCCTTTTAGTCCCAGCTGTTCTAAAGAGCCGTTGGTGTCTATATCCATAGTAGATATTATACCGTCAAATGTATGTA
GACGATAGCCTGCCCCAATTTTATGAATCGATGTTTTTCCTTTTGCCAACTCTTCTTTTCTCTTGGCTTTGTGAATCTAT
CACGAGCGTGACTGCTTTTATTGAATGTGTGCGTCCAATTGTTTGTACTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56120.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis