Browse Element(s) Details


Os.8825.4.S1_at

Description gb:NM_192705.1
DB_XREF= gi:34912493
GEN=P0704D04.21
TID=Os.8825.4
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.8825 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative amino acid or GABA permease (P0704D04.21), mRNA.
PROD=putative amino acid or GABA permease
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g422505/11ubiquitin, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g42190Os.35808.1.S1_at11/111+24238365..24240087DnaJ domain containing protein, expressed
LOC_Os01g42200Os.54424.1.S1_at11/111+24241013..24241704expressed protein
LOC_Os01g42210OsAffx.23631.1.S1_at9/111+24246206..24247977hypothetical protein
LOC_Os01g42220NANA1+24249192..24249710hypothetical protein
LOC_Os01g42234Os.8825.2.S1_x_at11/111+24250566..24260297amino acid permease family protein, putative, expressed
LOC_Os01g42234Os.8825.3.S1_at11/111+24250566..24260297amino acid permease family protein, putative, expressed
LOC_Os01g42234Os.8825.3.S1_x_at11/111+24250566..24260297amino acid permease family protein, putative, expressed
LOC_Os01g42234Os.8825.1.S1_a_at11/111+24250566..24260297amino acid permease family protein, putative, expressed
LOC_Os01g42250Os.56120.1.S1_at11/111+24260996..24264077ubiquitin, putative, expressed
LOC_Os01g42250Os.8825.4.S1_x_at9/111+24260996..24264077ubiquitin, putative, expressed
LOC_Os01g42250Os.8825.4.S1_at5/111+24260996..24264077ubiquitin, putative, expressed
LOC_Os01g42260Os.7109.1.S1_a_at11/111+24265217..24276734Single-stranded DNA binding protein, SSDP containing protein, expressed
LOC_Os01g42270OsAffx.11436.2.S1_at11/111+24279648..24289792Single-stranded DNA binding protein, SSDP containing protein
LOC_Os01g42270OsAffx.11436.1.S1_x_at10/111+24279648..24289792Single-stranded DNA binding protein, SSDP containing protein
LOC_Os01g42270OsAffx.21385.1.S1_at1/111+24279648..24289792Single-stranded DNA binding protein, SSDP containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8825.4.S1_at--1055--10391Chr01:24261805..24261829 (25 bp)
TTGAAGGAGCTGAGGTATAAACCTG
LOC_Os01g42250
Os.8825.4.S1_at--595--8071Chr01:24261810..24261834 (25 bp)
GGAGCTGAGGTATAAACCTGTGCAT
LOC_Os01g42250
Os.8825.4.S1_at--221--7871Chr01:24261818..24261842 (25 bp)
GGTATAAACCTGTGCATGGTTCCAT
LOC_Os01g42250
Os.8825.4.S1_at--128--351Chr01:24261821..24261845 (25 bp)
ATAAACCTGTGCATGGTTCCATTCT
LOC_Os01g42250
Os.8825.4.S1_at--744--2371NONE
AAACCTGTGCATGGTTCCATTCTAT
NONE
Os.8825.4.S1_at--324--1771Chr01:24261825..24261845 (21 bp)
ACCTGTGCATGGTTCCATTCTATTA
LOC_Os01g42250
Os.8825.4.S1_at--615--3891NONE
CTGTGCATGGTTCCATTCTATTACA
NONE
Os.8825.4.S1_at--563--7331NONE
GTGCATGGTTCCATTCTATTACAGA
NONE
Os.8825.4.S1_at--1138--4991NONE
GCATGGTTCCATTCTATTACAGAAG
NONE
Os.8825.4.S1_at--80--831NONE
ATGGTTCCATTCTATTACAGAAGCA
NONE
Os.8825.4.S1_at--678--6691NONE
GTTCCATTCTATTACAGAAGCAAGC
NONE
Target Sequence 
TTGAAGGAGCTGAGGTATAAACCTGTGCATGGTTCCATTCTATTACAGAAGCAAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8825.4.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis