Browse Element(s) Details


OsAffx.21385.1.S1_at

Description gb:NM_192678.1
DB_XREF= gi:34912439
GEN=P0681B11.24
TID=OsAffx.21385.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0681B11.24 (P0681B11.24), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g422701/11Single-stranded DNA binding protein, SSDP containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g42234Os.8825.2.S1_x_at11/111+24250566..24260297amino acid permease family protein, putative, expressed
LOC_Os01g42234Os.8825.3.S1_at11/111+24250566..24260297amino acid permease family protein, putative, expressed
LOC_Os01g42234Os.8825.3.S1_x_at11/111+24250566..24260297amino acid permease family protein, putative, expressed
LOC_Os01g42234Os.8825.1.S1_a_at11/111+24250566..24260297amino acid permease family protein, putative, expressed
LOC_Os01g42250Os.56120.1.S1_at11/111+24260996..24264077ubiquitin, putative, expressed
LOC_Os01g42250Os.8825.4.S1_x_at9/111+24260996..24264077ubiquitin, putative, expressed
LOC_Os01g42250Os.8825.4.S1_at5/111+24260996..24264077ubiquitin, putative, expressed
LOC_Os01g42260Os.7109.1.S1_a_at11/111+24265217..24276734Single-stranded DNA binding protein, SSDP containing protein, expressed
LOC_Os01g42270OsAffx.11436.2.S1_at11/111+24279648..24289792Single-stranded DNA binding protein, SSDP containing protein
LOC_Os01g42270OsAffx.11436.1.S1_x_at10/111+24279648..24289792Single-stranded DNA binding protein, SSDP containing protein
LOC_Os01g42270OsAffx.21385.1.S1_at1/111+24279648..24289792Single-stranded DNA binding protein, SSDP containing protein
LOC_Os01g42280Os.21178.1.S1_at11/111+24296605..24299158pentatricopeptide, putative, expressed
LOC_Os01g42280Os.21178.1.S2_at11/111+24296605..24299158pentatricopeptide, putative, expressed
LOC_Os01g42294Os.41315.1.S1_x_at11/111+24303225..24308635Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009908biological_processflower development
GO:0016481biological_processnegative regulation of transcription
GO:0005634cellular_componentnucleus
GO:0005515molecular_functionprotein binding
GO:0016564molecular_functiontranscriptional repressor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21385.1.S1_at--124--1391Chr01:24164136..24164160 (25 bp)
AGACCGCGGAAACGCTAGACGCTAA
NONE
OsAffx.21385.1.S1_at--417--5711Chr01:24164153..24164177 (25 bp)
GACGCTAAACCCTCTAGTCTAGCTA
NONE
OsAffx.21385.1.S1_at--490--2371Chr01:24164187..24164211 (25 bp)
AAACGAAGTCGTCCGGTGGCTACTG
NONE
OsAffx.21385.1.S1_at--236--211Chr01:24164220..24164244 (25 bp)
ATTTCCAGCGAAAATTCTGCAGCCC
NONE
OsAffx.21385.1.S1_at--246--3151Chr01:24164232..24164256 (25 bp)
AATTCTGCAGCCCATGCGATGCGAT
NONE
OsAffx.21385.1.S1_at--256--611Chr01:24164245..24164269 (25 bp)
ATGCGATGCGATTGCCGACACACAG
NONE
OsAffx.21385.1.S1_at--375--5631Chr01:24164261..24164285 (25 bp)
GACACACAGCTCTCTTCGAAATTGG
NONE
OsAffx.21385.1.S1_at--961--3171Chr01:24164280..24164304 (25 bp)
AATTGGATGCTCGTAGTGCATTTTC
NONE
OsAffx.21385.1.S1_at--721--7312Chr01:24164295..24164319 (25 bp)
GTGCATTTTCTTTTCGAGACGTTAA
NONE
OsAffx.21385.1.S1_at--778--9811Chr01:24164317..24164341 (25 bp)
TAAAATCGGAAAAGCCCTGGCCTCG
NONE
OsAffx.21385.1.S1_at--737--2651Chr01:24164328..24164352 (25 bp)
AAGCCCTGGCCTCGAAGCAAAAGCG
NONE
Target Sequence 
AGACCGCGGAAACGCTAGACGCTAAACCCTCTAGTCTAGCTAGAGAGACCAAAACGAAGTCGTCCGGTGGCTACTGGAGC
AGAAATTTCCAGCGAAAATTCTGCAGCCCATGCGATGCGATTGCCGACACACAGCTCTCTTCGAAATTGGATGCTCGTAG
TGCATTTTCTTTTCGAGACGTTAAAATCGGAAAAGCCCTGGCCTCGAAGCAAAAGCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21385.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis