Browse Element(s) Details


Os.21178.1.S2_at

Description gb:AK058392.1
DB_XREF= gi:32968410
TID=Os.21178.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.21178 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) selenium-binding protein-like (P0704D04.26), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-015-A08, full insert sequence.
FL= gb:AK062372.1 gb:AK058392.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4228011/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g42260Os.7109.1.S1_a_at11/111+24265217..24276734Single-stranded DNA binding protein, SSDP containing protein, expressed
LOC_Os01g42270OsAffx.11436.2.S1_at11/111+24279648..24289792Single-stranded DNA binding protein, SSDP containing protein
LOC_Os01g42270OsAffx.11436.1.S1_x_at10/111+24279648..24289792Single-stranded DNA binding protein, SSDP containing protein
LOC_Os01g42270OsAffx.21385.1.S1_at1/111+24279648..24289792Single-stranded DNA binding protein, SSDP containing protein
LOC_Os01g42280Os.21178.1.S1_at11/111+24296605..24299158pentatricopeptide, putative, expressed
LOC_Os01g42280Os.21178.1.S2_at11/111+24296605..24299158pentatricopeptide, putative, expressed
LOC_Os01g42294Os.41315.1.S1_x_at11/111+24303225..24308635Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.21178.1.S2_at--800--6471Chr01:24298625..24298649 (25 bp)
GATACGTCATACCAGTTTGATACGA
LOC_Os01g42280
Os.21178.1.S2_at--2--7051Chr01:24298786..24298810 (25 bp)
GTAAACAGTGTTTCTGTGGCCACAT
LOC_Os01g42280
Os.21178.1.S2_at--1--8671Chr01:24298800..24298824 (25 bp)
TGTGGCCACATGACTCTCTTTGAGA
LOC_Os01g42280
Os.21178.1.S2_at--413--2011Chr01:24298812..24298836 (25 bp)
ACTCTCTTTGAGACCTACAGCTAGT
LOC_Os01g42280
Os.21178.1.S2_at--1068--3391Chr01:24298829..24298853 (25 bp)
CAGCTAGTCAGCTACAAGTGGTTGA
LOC_Os01g42280
Os.21178.1.S2_at--1085--771Chr01:24298919..24298943 (25 bp)
ATGTGCTGCAGTTCTGTTGTCATCC
LOC_Os01g42280
Os.21178.1.S2_at--341--6631Chr01:24298934..24298958 (25 bp)
GTTGTCATCCAATTGTTCGGTTTTG
LOC_Os01g42280
Os.21178.1.S2_at--918--5211Chr01:24298958..24298982 (25 bp)
GAATTAGGATCGCTACTCTGTGCTG
LOC_Os01g42280
Os.21178.1.S2_at--54--3931Chr01:24298980..24299004 (25 bp)
CTGGCCCTTTTTCGGATACTGTCAA
LOC_Os01g42280
Os.21178.1.S2_at--932--7131Chr01:24299050..24299074 (25 bp)
GTCATTACTTCTTTTCACACTGCAA
LOC_Os01g42280
Os.21178.1.S2_at--804--7051Chr01:24299083..24299107 (25 bp)
GTAACTGTATATTCCTCCTGTAAAG
LOC_Os01g42280
Target Sequence 
GATACGTCATACCAGTTTGATACGAAATAACATCTCTTACATGATTGTATTAACCTTGCAGATACATTACAGAGTATGCA
TCTATTGTTGGGAGGCATTATTCCTAAAATCAGAAGGTTCTGATAAAAGAACCAATCACCTTAAAGGGCTGAAACCAGCG
AGTAAACAGTGTTTCTGTGGCCACATGACTCTCTTTGAGACCTACAGCTAGTCAGCTACAAGTGGTTGAATAATTTCAAG
AAAAGCATAACTGTTTTAGTCACTGTAACGATGAATATGATAACATGCTGACAGATGTGCTGCAGTTCTGTTGTCATCCA
ATTGTTCGGTTTTGAATTAGGATCGCTACTCTGTGCTGGCCCTTTTTCGGATACTGTCAAAGAACAATGTCCAGATGTTA
TGGGCAACTTATTATCATTATATAGGTCATTACTTCTTTTCACACTGCAAACAAAAGTGTAACTGTATATTCCTCCTGTA
AAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.21178.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis