Browse Element(s) Details


Os.21178.1.S1_at

Description gb:AK062372.1
DB_XREF= gi:32972390
TID=Os.21178.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.21178 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) selenium-binding protein-like (P0704D04.26), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-102-A08, full insert sequence.
FL= gb:AK062372.1 gb:AK058392.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4228011/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g42260Os.7109.1.S1_a_at11/111+24265217..24276734Single-stranded DNA binding protein, SSDP containing protein, expressed
LOC_Os01g42270OsAffx.11436.2.S1_at11/111+24279648..24289792Single-stranded DNA binding protein, SSDP containing protein
LOC_Os01g42270OsAffx.11436.1.S1_x_at10/111+24279648..24289792Single-stranded DNA binding protein, SSDP containing protein
LOC_Os01g42270OsAffx.21385.1.S1_at1/111+24279648..24289792Single-stranded DNA binding protein, SSDP containing protein
LOC_Os01g42280Os.21178.1.S1_at11/111+24296605..24299158pentatricopeptide, putative, expressed
LOC_Os01g42280Os.21178.1.S2_at11/111+24296605..24299158pentatricopeptide, putative, expressed
LOC_Os01g42294Os.41315.1.S1_x_at11/111+24303225..24308635Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.21178.1.S1_at--786--6291Chr01:24297957..24297981 (25 bp)
GATGATCTGTGCTTATGCAGACCAT
LOC_Os01g42280
Os.21178.1.S1_at--998--7671Chr01:24297987..24298011 (25 bp)
GGGTTCTGAGGCTCTGAAGCTTTTA
LOC_Os01g42280
Os.21178.1.S1_at--565--3011Chr01:24298017..24298041 (25 bp)
AATGCAGCTTGAAGGCACATCTCCA
LOC_Os01g42280
Os.21178.1.S1_at--354--731Chr01:24298050..24298074 (25 bp)
ATGTTGGGATTCAGTACTTTCAGCT
LOC_Os01g42280
Os.21178.1.S1_at--1051--9151Chr01:24298101..24298125 (25 bp)
TGCCCTAAGCACCTTCTATGAGATG
LOC_Os01g42280
Os.21178.1.S1_at--592--3191Chr01:24298146..24298170 (25 bp)
CAATCTGCGGACATGGAGTCTGTTA
LOC_Os01g42280
Os.21178.1.S1_at--227--4691Chr01:24298175..24298199 (25 bp)
GCGGCTTGTCTCGAAATGGTATGCA
LOC_Os01g42280
Os.21178.1.S1_at--980--5331Chr01:24298234..24298258 (25 bp)
GAAGTAGAGCCAGCACCTAGTCCAA
LOC_Os01g42280
Os.21178.1.S1_at--829--3111Chr01:24298260..24298284 (25 bp)
AATATTTTCTGCAGCACTTCTTGCT
LOC_Os01g42280
Os.21178.1.S1_at--333--5031Chr01:24298371..24298395 (25 bp)
GCAGTCGCTGCTAAACATGTATGGT
LOC_Os01g42280
Os.21178.1.S1_at--167--9791Chr01:24298430..24298454 (25 bp)
TAAGATTTCTTGCTGCTGCACAGTA
LOC_Os01g42280
Target Sequence 
GATGATCTGTGCTTATGCAGACCATGGAATGGGTTCTGAGGCTCTGAAGCTTTTATATCAAATGCAGCTTGAAGGCACAT
CTCCAACTGCAGCATGTTGGGATTCAGTACTTTCAGCTTTTATTCGAAATGGACAGTTAGATGATGCCCTAAGCACCTTC
TATGAGATGCTTCAAACGAGCACACGCCCCAATCTGCGGACATGGAGTCTGTTAATAAGCGGCTTGTCTCGAAATGGTAT
GCATCCTGAGGTTATGAATCTATGTTGCAAGATGCAAGAAGTAGAGCCAGCACCTAGTCCAACAATATTTTCTGCAGCAC
TTCTTGCTGTTAAATCTGCAGCTTCAGTACAGTATGGAAAAGCAATGCACGCATGCATTGTTAAGAAGGGCCTATTATTG
TCGAAATCTGTGGTGCAGTCGCTGCTAAACATGTATGGTAGCTTCAATGATAGAGGCACAGTAGAGAGTTTGCTAAGATT
TCTTGCTGCTGCACAGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.21178.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis