Browse Element(s) Details


OsAffx.23633.1.S1_at

Description tigr:9629.m04054
TID=OsAffx.23633.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4231011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g42294Os.41315.1.S1_x_at11/111+24303225..24308635Leucine Rich Repeat family protein, expressed
LOC_Os01g42310OsAffx.23633.1.S1_at11/111+24328389..24329818hypothetical protein
LOC_Os01g42310OsAffx.10222.1.S1_x_at1/111+24328389..24329818hypothetical protein
LOC_Os01g42310OsAffx.30217.1.S1_x_at1/111+24328389..24329818hypothetical protein
LOC_Os01g42320OsAffx.23634.2.S1_x_at11/111+24342521..24346789Eukaryotic aspartyl protease family protein
LOC_Os01g42330OsAffx.21375.1.S1_at11/111+24348907..24354383retrotransposon protein, putative, unclassified
LOC_Os01g42330OsAffx.21375.2.S1_x_at7/111+24348907..24354383retrotransposon protein, putative, unclassified
LOC_Os01g42330OsAffx.23250.2.S1_x_at1/111+24348907..24354383retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23633.1.S1_at--1051--1171Chr01:24328426..24328450 (25 bp)
AGTACCGCAGAAGGAATGCCCTTAT
LOC_Os01g42310
OsAffx.23633.1.S1_at--7--931Chr01:24328437..24328461 (25 bp)
AGGAATGCCCTTATGGGTTCGCCGG
LOC_Os01g42310
OsAffx.23633.1.S1_at--144--811Chr01:24328449..24328473 (25 bp)
ATGGGTTCGCCGGTGTCCAGCATGC
LOC_Os01g42310
OsAffx.23633.1.S1_at--285--6351Chr01:24328480..24328851 (25 bp)
GATCCCCTAACTGCGATACGGTGAA
LOC_Os01g42310
OsAffx.23633.1.S1_at--304--9111Chr01:24328491..24328862 (25 bp)
TGCGATACGGTGAACAGGGACTACT
LOC_Os01g42310
OsAffx.23633.1.S1_at--608--1851Chr01:24328851..24328875 (25 bp)
ACAGGGACTACTGCTTTGTCGGGAC
LOC_Os01g42310
OsAffx.23633.1.S1_at--526--8111Chr01:24328855..24328879 (25 bp)
GGACTACTGCTTTGTCGGGACCGGT
LOC_Os01g42310
OsAffx.23633.1.S1_at--15--9791Chr01:24329625..24329649 (25 bp)
TAACCGACGAAACACCGGTGGTCAG
LOC_Os01g42310
OsAffx.23633.1.S1_at--524--1771Chr01:24329673..24329697 (25 bp)
ACCGGCGGGTACACACCGATCAGAC
LOC_Os01g42310
OsAffx.23633.1.S1_at--184--4651Chr01:24329706..24329730 (25 bp)
GCGTCAAGAGGCAGAGGCGATTTCA
LOC_Os01g42310
OsAffx.23633.1.S1_at--620--1771Chr01:24329740..24329764 (25 bp)
ACCGGGTGATCCAGATCGGTCAGAC
LOC_Os01g42310
Target Sequence 
AGTACCGCAGAAGGAATGCCCTTATGGGTTCGCCGGTGTCCAGCATGCCATCCCGATCCCCTAACTGCGATACGGTGAAC
AGGGACTACTGCTTTGTCGGGACCGGTCAGATCGGGTTCGGCGGTCTAACCGACGAAACACCGGTGGTCAGACCGACGGC
ATCACGGCGGTCAGACCGGCGGGTACACACCGATCAGACCGGCGGCAGCGTCAAGAGGCAGAGGCGATTTCAGGCGGTTG
GACCGGGTGATCCAGATCGGTCAGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23633.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis