Browse Element(s) Details


OsAffx.6151.1.S1_at

Description tigr:9637.m00066
TID=OsAffx.6151.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0223010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g02190Os.51689.1.S1_at1/119+863748..867401retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g02200NANA9+872791..873087hypothetical protein
LOC_Os09g02214Os.17380.3.S1_at11/119+877145..889186Na+/H+ antiporter precursor, putative, expressed
LOC_Os09g02214Os.17380.4.A1_x_at11/119+877145..889186Na+/H+ antiporter precursor, putative, expressed
LOC_Os09g02214Os.17380.1.S1_x_at10/119+877145..889186Na+/H+ antiporter precursor, putative, expressed
LOC_Os09g02230OsAffx.6151.1.S1_at10/119+892123..893709hypothetical protein
LOC_Os09g02240NANA9+899864..900142hypothetical protein
LOC_Os09g02250Os.54641.1.S1_at11/119+905903..908918transposon protein, putative, unclassified, expressed
LOC_Os09g02250Os.26787.2.S1_x_at1/119+905903..908918transposon protein, putative, unclassified, expressed
LOC_Os09g02250Os.41315.1.S1_x_at1/119+905903..908918transposon protein, putative, unclassified, expressed
LOC_Os09g02260OsAffx.6152.1.S1_at11/119+914398..916958pentatricopeptide, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6151.1.S1_at--918--8351Chr09:892157..892181 (25 bp)
GGCGGCAGACCCGACGAATCGACGA
LOC_Os09g02230
OsAffx.6151.1.S1_at--1096--1851NONE
ACGACGACGAGGACTTAGAGGTGAT
NONE
OsAffx.6151.1.S1_at--64--9611Chr09:893456..893480 (25 bp)
TCATGCCATGTTTTGAGTCGACCTC
LOC_Os09g02230
OsAffx.6151.1.S1_at--650--6091Chr09:893470..893494 (25 bp)
GAGTCGACCTCTGAGTTGTTCACAA
LOC_Os09g02230
OsAffx.6151.1.S1_at--72--2291Chr09:893503..893527 (25 bp)
AAATGCTCTATCATGCTGATCCGGT
LOC_Os09g02230
OsAffx.6151.1.S1_at--655--3531Chr09:893514..893538 (25 bp)
CATGCTGATCCGGTGCTTGGAGGAT
LOC_Os09g02230
OsAffx.6151.1.S1_at--1027--711Chr09:893537..893561 (25 bp)
ATGATCTGGCCGTGGTCTCGCACGT
LOC_Os09g02230
OsAffx.6151.1.S1_at--1064--1891Chr09:893558..893582 (25 bp)
ACGTCTTTCCGTACGCGATCGCGGA
LOC_Os09g02230
OsAffx.6151.1.S1_at--984--6051Chr09:893581..893605 (25 bp)
GAGTTCCCCTATAAATACCTTGGCA
LOC_Os09g02230
OsAffx.6151.1.S1_at--665--8491Chr09:893601..893625 (25 bp)
TGGCATCCTATTCTCCATCAAGAAA
LOC_Os09g02230
OsAffx.6151.1.S1_at--649--3131Chr09:893624..893648 (25 bp)
AATTACCAATAGCAGCCTACAGCCG
LOC_Os09g02230
Target Sequence 
GGCGGCAGACCCGACGAATCGACGACGACGAGGACTTAGAGGTGATCAAGGGGATCATGCCATGTTTTGAGTCGACCTCT
GAGTTGTTCACAAACTTTGGAAAATGCTCTATCATGCTGATCCGGTGCTTGGAGGATGATCTGGCCGTGGTCTCGCACGT
CTTTCCGTACGCGATCGCGGAGTTCCCCTATAAATACCTTGGCATCCTATTCTCCATCAAGAAATTACCAATAGCAGCCT
ACAGCCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6151.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis