Browse Element(s) Details


Os.51689.1.S1_at

Description gb:AK063408.1
DB_XREF= gi:32973426
TID=Os.51689.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51689 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-115-A11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-115-A11, full insert sequence.
FL= gb:AK063408.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3649011/11retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os09g021901/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g36420NANA3+20142119..20142391hypothetical protein
LOC_Os03g36439Os.13384.1.S1_at10/113+20142655..20149628F-box domain containing protein, expressed
LOC_Os03g36460OsAffx.25383.1.S1_at11/113+20150230..20150748hypothetical protein
LOC_Os03g36470OsAffx.20440.1.S1_x_at1/113+20156250..20159180retrotransposon protein, putative, unclassified
LOC_Os03g36470OsAffx.20440.2.S1_x_at1/113+20156250..20159180retrotransposon protein, putative, unclassified
LOC_Os03g36470OsAffx.8244.1.S1_at1/113+20156250..20159180retrotransposon protein, putative, unclassified
LOC_Os03g36470OsAffx.20628.1.S1_at1/113+20156250..20159180retrotransposon protein, putative, unclassified
LOC_Os03g36480NANA3+20159535..20161578retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g36490Os.51689.1.S1_at11/113+20164598..20166450retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os03g36500OsAffx.13199.1.S1_x_at11/113+20171316..20172853hypothetical protein
LOC_Os03g36500OsAffx.20098.1.S1_at1/113+20171316..20172853hypothetical protein
LOC_Os03g36520OsAffx.13200.2.S1_x_at1/113+20176144..20177246hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51689.1.S1_at--313--7452Chr09:866914..866935 (22 bp)
GTGTCGACTCTCGACCGACGGAGAT
LOC_Os09g02190
Os.51689.1.S1_at--606--1411Chr03:20165029..20165053 (25 bp)
AGACAACTACATGCCTCTCTTCTTT
LOC_Os03g36490
Os.51689.1.S1_at--370--9631Chr03:20164997..20165021 (25 bp)
TCATGGCTAATAACGAGACGGCATA
LOC_Os03g36490
Os.51689.1.S1_at--1158--2191Chr03:20164945..20164969 (25 bp)
ACAACGCACATGACAAGAAGCTGAG
LOC_Os03g36490
Os.51689.1.S1_at--922--1851Chr03:20164789..20164813 (25 bp)
ACGAGAACTTATTGGACAGCAAGAT
LOC_Os03g36490
Os.51689.1.S1_at--1081--3951Chr03:20164751..20164775 (25 bp)
CGGTTTTTCGCACCCTGCAATAGAA
LOC_Os03g36490
Os.51689.1.S1_at--918--10631Chr03:20164745..20164769 (25 bp)
TTCGCACCCTGCAATAGAACGCGGT
LOC_Os03g36490
Os.51689.1.S1_at--995--10011Chr03:20164731..20164755 (25 bp)
TAGAACGCGGTAGCGGCAATCACCC
LOC_Os03g36490
Os.51689.1.S1_at--848--6951Chr03:20164722..20164746 (25 bp)
GTAGCGGCAATCACCCTCCTGGACA
LOC_Os03g36490
Os.51689.1.S1_at--355--3911Chr03:20164704..20164728 (25 bp)
CTGGACACTCTGCTTCAGGAAGATG
LOC_Os03g36490
Os.51689.1.S1_at--825--3131Chr03:20164618..20164642 (25 bp)
AATTAACTCCTCAAGCATCCGTACG
LOC_Os03g36490
Target Sequence 
GTGTCGACTCTCGACCGACGGAGATCCTCGAGTACGACAACTTCGGCTACCACTACGACTACAGCAACCTCGACGACTTC
GACGAAGGCTACGAAGACAACTACATGCCTCTCTTCTTTGGCGTTTTCATGGCTAATAACGAGACGGCATAACAGCGCCA
AGCCCGAGAAGCAGAAGAACAACGCACATGACAAGAAGCTGAGCGTCGCCGACTGGAGGAGGAGCGACTAGCACAAGAGC
GAGACCGGCTGCAGCGTGAGCAACAGGAACGCGAACAGGCTGCGAAGGAGGCTGAGGACCGGCAACAGCGAGCCTTGGAG
GTCGGGCGACGAGCACGAGAACTTATTGGACAGCAAGATGTTGAGGGGACAGCGGTTTTTCGCACCCTGCAATAGAACGC
GGTAGCGGCAATCACCCTCCTGGACACTCTGCTTCAGGAAGATGCACCCAACCACGTCGTCAACATCTTAAACCAAACCA
AGCCCATGATCGCCTCCTCGGTCCCAATTAACTCCTCAAGCATCCGTACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51689.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis