Browse Element(s) Details


OsAffx.29687.1.S1_at

Description tigr:9637.m00079
TID=OsAffx.29687.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0237010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g02320OsAffx.10222.1.S1_x_at1/119+952032..953641hypothetical protein
LOC_Os09g02330OsAffx.17531.1.S1_at11/119+956941..957726hypothetical protein
LOC_Os09g02340OsAffx.29685.1.S1_at9/119+959331..961386hypothetical protein
LOC_Os09g02350OsAffx.29686.1.S1_at11/119+966405..966752hypothetical protein
LOC_Os09g02360Os.47738.1.S1_at11/119+968784..970670Cyclin, N-terminal domain containing protein, expressed
LOC_Os09g02370OsAffx.29687.1.S1_at10/119+978181..980195hypothetical protein
LOC_Os09g02370OsAffx.14332.1.S1_x_at2/119+978181..980195hypothetical protein
LOC_Os09g02380OsAffx.17532.1.S1_x_at11/119+981778..982332hypothetical protein
LOC_Os09g02390Os.57352.1.S1_at4/119+986487..986860hypothetical protein
LOC_Os09g02400Os.10647.2.S1_at11/119+992257..994621expressed protein
LOC_Os09g02400Os.37570.1.S1_s_at11/119+992257..994621expressed protein
LOC_Os09g02410OsAffx.29688.1.S1_at11/119+995050..996725D-mannose binding lectin family protein
LOC_Os09g02410Os.27556.1.S1_at2/119+995050..996725D-mannose binding lectin family protein
LOC_Os09g02420NANA9+1000951..1002281expressed protein
LOC_Os09g02430NANA9+1003701..1003943hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29687.1.S1_at--903--4311Chr09:979421..979819 (25 bp)
GCGAGGGTACCAAAAACGAGACGAT
LOC_Os09g02370
OsAffx.29687.1.S1_at--839--5991Chr09:979404..979428 (25 bp)
GAGACGATCCATCCGCTCGGAGAAA
LOC_Os09g02370
OsAffx.29687.1.S1_at--989--4451Chr09:979390..979414 (25 bp)
GCTCGGAGAAATCTTAACCCACCAC
LOC_Os09g02370
OsAffx.29687.1.S1_at--885--5571Chr09:979383..979407 (25 bp)
GAAATCTTAACCCACCACCGCAAAT
LOC_Os09g02370
OsAffx.29687.1.S1_at--561--4111Chr09:979365..979389 (25 bp)
CGCAAATCCCGTCGGCTGTGTTCGG
LOC_Os09g02370
OsAffx.29687.1.S1_at--957--3991Chr09:979356..979380 (25 bp)
CGTCGGCTGTGTTCGGGAAAACGAT
LOC_Os09g02370
OsAffx.29687.1.S1_at--202--8151Chr09:979341..979365 (25 bp)
GGAAAACGATGCTCGCATTCCGGCA
LOC_Os09g02370
OsAffx.29687.1.S1_at--337--4951NONE
GCATTCCGGCACAGCAGTCATGGCG
NONE
OsAffx.29687.1.S1_at--5--3971Chr09:978476..978500 (25 bp)
CGGTATCCTCTGGACCTGGCGAAGA
LOC_Os09g02370
OsAffx.29687.1.S1_at--462--6611Chr09:978325..978349 (25 bp)
GATTGGAGCTGGACCTGAAGTCGTC
LOC_Os09g02370
OsAffx.29687.1.S1_at--182--791Chr09:978221..978245 (25 bp)
ATGGGCCCCGCGCTCAACTTTTTGA
LOC_Os09g02370
Target Sequence 
GCGAGGGTACCAAAAACGAGACGATCCATCCGCTCGGAGAAATCTTAACCCACCACCGCAAATCCCGTCGGCTGTGTTCG
GGAAAACGATGCTCGCATTCCGGCACAGCAGTCATGGCGGGCGGCGGTCCTCGTGCTTGTCGTCGTCGTCCTCGGAGCGG
TCATGGCGGGAGGCGGCGGCGCGTCCTCGCCGCCCCCCTCACCGACGGCGCTCTCCTCACTACCTGCCCCAATGCCGAGC
GGCGGCGGTATCCTCTGGACCTGGCGAAGAAGCGGCGGCACGGATCTGGAGCGTCCTCGCCGTCCTCCAAAACGACGGCG
GCGGCGCCGTGGATCTGAAGATGGTGGCGGCGGTGGCGCGTCCTCGCCCGCCCTCCTCACCGGCGACGGCGGCGTGGATT
GGAGCTGGACCTGAAGTCGTCGGAGTGGATGGAGTTCCTGCTCGGGAATCAAGGTCGGCCTCCTCTGCACGGCGCGTTCT
CGTCCTCGCATCTCTCATCAATGGGCCCCGCGCTCAACTTTTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29687.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis