Browse Element(s) Details


OsAffx.29688.1.S1_at

Description tigr:9637.m00085
TID=OsAffx.29688.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to SLG-like 10
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0241011/11D-mannose binding lectin family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g02360Os.47738.1.S1_at11/119+968784..970670Cyclin, N-terminal domain containing protein, expressed
LOC_Os09g02370OsAffx.29687.1.S1_at10/119+978181..980195hypothetical protein
LOC_Os09g02370OsAffx.14332.1.S1_x_at2/119+978181..980195hypothetical protein
LOC_Os09g02380OsAffx.17532.1.S1_x_at11/119+981778..982332hypothetical protein
LOC_Os09g02390Os.57352.1.S1_at4/119+986487..986860hypothetical protein
LOC_Os09g02400Os.10647.2.S1_at11/119+992257..994621expressed protein
LOC_Os09g02400Os.37570.1.S1_s_at11/119+992257..994621expressed protein
LOC_Os09g02410OsAffx.29688.1.S1_at11/119+995050..996725D-mannose binding lectin family protein
LOC_Os09g02410Os.27556.1.S1_at2/119+995050..996725D-mannose binding lectin family protein
LOC_Os09g02420NANA9+1000951..1002281expressed protein
LOC_Os09g02430NANA9+1003701..1003943hypothetical protein
LOC_Os09g02440Os.56058.1.S1_at11/119+1005810..1011534DCL protein, chloroplast precursor, putative, expressed
LOC_Os09g02450NANA9+1014115..1014456hypothetical protein
LOC_Os09g02460OsAffx.22947.5.S1_x_at1/119+1017949..1021957retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0004672molecular_functionprotein kinase activity
GO:0005529molecular_functionsugar binding
GO:0016301molecular_functionkinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29688.1.S1_at--920--2131Chr09:995515..995539 (25 bp)
ACAGAGGGTGTCGAGCTTCGGCAGC
LOC_Os09g02410
OsAffx.29688.1.S1_at--302--7531Chr09:995489..995513 (25 bp)
GTGGAAGGCAGAGAGCATCCAGCTC
LOC_Os09g02410
OsAffx.29688.1.S1_at--31--4991Chr09:995475..995499 (25 bp)
GCATCCAGCTCCGTTGTGTGGGTTG
LOC_Os09g02410
OsAffx.29688.1.S1_at--802--7891Chr09:995455..995479 (25 bp)
GGTTGCTGATCAGTCGGCGCCCATC
LOC_Os09g02410
OsAffx.29688.1.S1_at--701--8411Chr09:995352..995376 (25 bp)
GGCCACGCCCTTTGGAGTACTAACG
LOC_Os09g02410
OsAffx.29688.1.S1_at--98--3331Chr09:995349..995373 (25 bp)
CACGCCCTTTGGAGTACTAACGTCA
LOC_Os09g02410
OsAffx.29688.1.S1_at--196--4871Chr09:995283..995307 (25 bp)
GCTATGGCGGTGCTCGCAAACTCTA
LOC_Os09g02410
OsAffx.29688.1.S1_at--560--4791Chr09:995272..995296 (25 bp)
GCTCGCAAACTCTAGCAACCTCGTG
LOC_Os09g02410
OsAffx.29688.1.S1_at--106--4651Chr09:995168..995192 (25 bp)
GCGTCATCTACCGAACGCGCGGTGG
LOC_Os09g02410
OsAffx.29688.1.S1_at--932--4691Chr09:995140..995164 (25 bp)
GCGGCTTGTCTCATGGAAGGGCACC
LOC_Os09g02410
OsAffx.29688.1.S1_at--561--4931Chr09:995137..995161 (25 bp)
GCTTGTCTCATGGAAGGGCACCACC
LOC_Os09g02410
Target Sequence 
ACAGAGGGTGTCGAGCTTCGGCAGCGGTGGAAGGCAGAGAGCATCCAGCTCCGTTGTGTGGGTTGCTGATCAGTCGGCGC
CCATCGCCGACCATCCTTCCTCCCCGGCTTCCATGCTCGCCATTGCCAGCGACGGCAACCTAGTCTTGTCCGATGGCGCC
ACCGGCCACGCCCTTTGGAGTACTAACGTCACCGCCGGTGTGAACTCGTCGGCGTCGGGAGGAGGCGGCGGTGCTATGGC
GGTGCTCGCAAACTCTAGCAACCTCGTGCTCCGGCTGCCGGATGGCACCGTCTTGTGGGAGACGTTCGAGCACCCCTGCA
ACACATTCCTGCCCGGCATGAAGATCGGCGTCATCTACCGAACGCGCGGTGGCGTGCGGCTTGTCTCATGGAAGGGCACC
ACC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29688.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis