Browse Element(s) Details


Os.27556.1.S1_at

Description gb:AK065354.1
DB_XREF= gi:32975372
TID=Os.27556.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.27556 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013021B08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013021B08, full insert sequence.
FL= gb:AK065354.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g024102/11D-mannose binding lectin family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g02360Os.47738.1.S1_at11/119+968784..970670Cyclin, N-terminal domain containing protein, expressed
LOC_Os09g02370OsAffx.29687.1.S1_at10/119+978181..980195hypothetical protein
LOC_Os09g02370OsAffx.14332.1.S1_x_at2/119+978181..980195hypothetical protein
LOC_Os09g02380OsAffx.17532.1.S1_x_at11/119+981778..982332hypothetical protein
LOC_Os09g02390Os.57352.1.S1_at4/119+986487..986860hypothetical protein
LOC_Os09g02400Os.10647.2.S1_at11/119+992257..994621expressed protein
LOC_Os09g02400Os.37570.1.S1_s_at11/119+992257..994621expressed protein
LOC_Os09g02410OsAffx.29688.1.S1_at11/119+995050..996725D-mannose binding lectin family protein
LOC_Os09g02410Os.27556.1.S1_at2/119+995050..996725D-mannose binding lectin family protein
LOC_Os09g02420NANA9+1000951..1002281expressed protein
LOC_Os09g02430NANA9+1003701..1003943hypothetical protein
LOC_Os09g02440Os.56058.1.S1_at11/119+1005810..1011534DCL protein, chloroplast precursor, putative, expressed
LOC_Os09g02450NANA9+1014115..1014456hypothetical protein
LOC_Os09g02460OsAffx.22947.5.S1_x_at1/119+1017949..1021957retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0004672molecular_functionprotein kinase activity
GO:0005529molecular_functionsugar binding
GO:0016301molecular_functionkinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27556.1.S1_at--1021--1031Chr09:997194..997218 (25 bp)
AGGTGCATCTCAAGCGTTGGCGTGA
NONE
Os.27556.1.S1_at--592--7831Chr09:997131..997155 (25 bp)
GGTAATTTTGTTTCCCTGTATTGAT
NONE
Os.27556.1.S1_at--120--5531Chr09:996995..997019 (25 bp)
GAAAACACAGAAAACTCCTCCCCAT
NONE
Os.27556.1.S1_at--582--1991Chr09:996982..997006 (25 bp)
ACTCCTCCCCATCAGAATCGATGAG
NONE
Os.27556.1.S1_at--997--1391Chr09:996959..996983 (25 bp)
AGACGGATGAGTTTAGGCAGGCCAC
NONE
Os.27556.1.S1_at--471--8271Chr09:996944..996968 (25 bp)
GGCAGGCCACGCACATTGCAAAATG
NONE
Os.27556.1.S1_at--512--3571Chr09:996915..996939 (25 bp)
CATAAACTCGGTGGGCTGCAGATCA
NONE
Os.27556.1.S1_at--214--9051Chr09:996899..996923 (25 bp)
TGCAGATCAAGCCATTCCCAATTGC
NONE
Os.27556.1.S1_at--92--10651Chr09:996885..996909 (25 bp)
TTCCCAATTGCCTCAACAGAGCAGT
NONE
Os.27556.1.S1_at--737--7031Chr09:996644..996668 (25 bp)
GTACACATTAAGATTGTCTGGCAAA
LOC_Os09g02410
Os.27556.1.S1_at--263--1071Chr09:996529..996553 (25 bp)
AGGGTATTTGCGTTGTTGATCTGTA
LOC_Os09g02410
Target Sequence 
AGGTGCATCTCAAGCGTTGGCGTGAACAAAAATTCAGAGAAGAGGAAAATTTTTAGTGAAATGGGTAATTTTGTTTCCCT
GTATTGATATTTCATTACTCACTGTAAGAGACATGATGGCAAAAAGATAGTTTACTCCTAATGGTTCAAAAAAGGTTTTG
GATGCATTGTATGGCACAAAGTGCTTATGGTTAATTAGAGAAAACACAGAAAACTCCTCCCCATCAGAATCGATGAGACG
GATGAGTTTAGGCAGGCCACGCACATTGCAAAATGGTTGCATAAACTCGGTGGGCTGCAGATCAAGCCATTCCCAATTGC
CTCAACAGAGCAGTTGAAAGATGGCCAGTTGGAGAAAAATAAACTCAAGGTTTATGACTGCAAAGCATATTGAAGGTGTA
CACATTAAGATTGTCTGGCAAAGAGGAAAGAAACAGATTAAGATTGTCTGGCAAAGAGGAAAGAAACAGATTAAAGAAAA
CATAGCATAATTGAAATTGAGATTTTTTTAACAGGGTATTTGCGTTGTTGATCTGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27556.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis