Browse Element(s) Details


Os.57352.1.S1_at

Description gb:AK111357.1
DB_XREF= gi:32996566
TID=Os.57352.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57352 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-181-H02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-181-H02, full insert sequence.
FL= gb:AK111357.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g023904/11hypothetical protein
LOC_Os04g440202/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g02350OsAffx.29686.1.S1_at11/119+966405..966752hypothetical protein
LOC_Os09g02360Os.47738.1.S1_at11/119+968784..970670Cyclin, N-terminal domain containing protein, expressed
LOC_Os09g02370OsAffx.29687.1.S1_at10/119+978181..980195hypothetical protein
LOC_Os09g02370OsAffx.14332.1.S1_x_at2/119+978181..980195hypothetical protein
LOC_Os09g02380OsAffx.17532.1.S1_x_at11/119+981778..982332hypothetical protein
LOC_Os09g02390Os.57352.1.S1_at4/119+986487..986860hypothetical protein
LOC_Os09g02400Os.10647.2.S1_at11/119+992257..994621expressed protein
LOC_Os09g02400Os.37570.1.S1_s_at11/119+992257..994621expressed protein
LOC_Os09g02410OsAffx.29688.1.S1_at11/119+995050..996725D-mannose binding lectin family protein
LOC_Os09g02410Os.27556.1.S1_at2/119+995050..996725D-mannose binding lectin family protein
LOC_Os09g02420NANA9+1000951..1002281expressed protein
LOC_Os09g02430NANA9+1003701..1003943hypothetical protein
LOC_Os09g02440Os.56058.1.S1_at11/119+1005810..1011534DCL protein, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57352.1.S1_at--986--8911Chr03:33345747..33345771 (25 bp)
TGAGCCAGGCGTACAAGAACCGTAT
NONE
Os.57352.1.S1_at--415--3077Chr09:986753..986777 (25 bp)
AATCATGGCAGAGGTTTCCGGGCTT
LOC_Os09g02390
Os.57352.1.S1_at--669--4852Chr06:16048092..16048116 (25 bp)
GCTTCCGGCCGTAACCTGGAGGCAA
NONE
Os.57352.1.S1_at--401--8014Chr09:986791..986815 (25 bp)
GGAGGCAAACCGTCCAACGATGGCA
LOC_Os09g02390
Os.57352.1.S1_at--258--2597Chr09:17814588..17814612 (25 bp)
AACGATGGCAGCTGCTCACACGGAT
NONE
Os.57352.1.S1_at--5--2194Chr09:986823..986847 (25 bp)
ACACGGATCCTCGATCGACGATGGT
LOC_Os09g02390
Os.57352.1.S1_at--1055--10051Chr03:33345871..33345895 (25 bp)
TAGTCAATGAATCACGGCCGCAACG
NONE
Os.57352.1.S1_at--708--5131Chr03:33345890..33345914 (25 bp)
GCAACGCCCGGTAGAAACGCGTACT
NONE
Os.57352.1.S1_at--691--5915Chr09:986929..986953 (25 bp)
GAGCTAATATCGATCTGCCAAAAAT
NONE
Os.57352.1.S1_at--690--5633Chr06:16048279..16048303 (25 bp)
GACACCTAAGGCATTTGTTCCAACC
NONE
Os.57352.1.S1_at--668--6694Chr09:986977..987001 (25 bp)
GTTCCAACCTCCCAGAGAACTGAAT
NONE
Target Sequence 
TGAGCCAGGCGTACAAGAACCGTATCAATCATGGCAGAGGTTTCCGGGCTTCCGGCCGTAACCTGGAGGCAAACCGTCCA
ACGATGGCAGCTGCTCACACGGATCCTCGATCGACGATGGTGTCTAGTCAATGAATCACGGCCGCAACGCCCGGTAGAAA
CGCGTACTGCACCATGTCCTATGGTTATTTGATTTCAGGTTCAGAGCTAATATCGATCTGCCAAAAATCAGAGGCGACAC
CTAAGGCATTTGTTCCAACCTCCCAGAGAACTGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57352.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis