Browse Element(s) Details


OsAffx.29686.1.S1_at

Description tigr:9637.m00077
TID=OsAffx.29686.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0235011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g02310OsAffx.29683.1.S1_at10/119+946473..947054hypothetical protein
LOC_Os09g02320OsAffx.10222.1.S1_x_at1/119+952032..953641hypothetical protein
LOC_Os09g02330OsAffx.17531.1.S1_at11/119+956941..957726hypothetical protein
LOC_Os09g02340OsAffx.29685.1.S1_at9/119+959331..961386hypothetical protein
LOC_Os09g02350OsAffx.29686.1.S1_at11/119+966405..966752hypothetical protein
LOC_Os09g02360Os.47738.1.S1_at11/119+968784..970670Cyclin, N-terminal domain containing protein, expressed
LOC_Os09g02370OsAffx.29687.1.S1_at10/119+978181..980195hypothetical protein
LOC_Os09g02370OsAffx.14332.1.S1_x_at2/119+978181..980195hypothetical protein
LOC_Os09g02380OsAffx.17532.1.S1_x_at11/119+981778..982332hypothetical protein
LOC_Os09g02390Os.57352.1.S1_at4/119+986487..986860hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29686.1.S1_at--62--5591Chr09:966435..966459 (25 bp)
GACAACGCTTGGATCTGGCCCCTGT
LOC_Os09g02350
OsAffx.29686.1.S1_at--210--491Chr09:966447..966471 (25 bp)
ATCTGGCCCCTGTGGCTGGATTCGG
LOC_Os09g02350
OsAffx.29686.1.S1_at--610--8571Chr09:966463..966487 (25 bp)
TGGATTCGGGCCCTCCTACGCTGGA
LOC_Os09g02350
OsAffx.29686.1.S1_at--750--5771Chr09:966501..966525 (25 bp)
GACGAAGAGGTCACCTTGGCTGATG
LOC_Os09g02350
OsAffx.29686.1.S1_at--574--1731Chr09:966513..966537 (25 bp)
ACCTTGGCTGATGGCTTTAGGCAAG
LOC_Os09g02350
OsAffx.29686.1.S1_at--396--4051Chr09:966542..966566 (25 bp)
CGATGGCGGCAAGGCTAACTCGGCT
LOC_Os09g02350
OsAffx.29686.1.S1_at--92--4851Chr09:966555..966579 (25 bp)
GCTAACTCGGCTGGCGATGGCAAGA
LOC_Os09g02350
OsAffx.29686.1.S1_at--726--6711Chr09:966584..966608 (25 bp)
GTTCGGCAAGGCTAGCCTGGCCAAT
LOC_Os09g02350
OsAffx.29686.1.S1_at--465--4851Chr09:966594..966618 (25 bp)
GCTAGCCTGGCCAATGACGGTAGGA
LOC_Os09g02350
OsAffx.29686.1.S1_at--408--3451Chr09:966641..966665 (25 bp)
CAGTAGGAGGCCAGCGCATCGCAAG
LOC_Os09g02350
OsAffx.29686.1.S1_at--679--3271Chr09:966691..966715 (25 bp)
CAACAGTGGCCGTCGAGAGTGCTGT
LOC_Os09g02350
Target Sequence 
GACAACGCTTGGATCTGGCCCCTGTGGCTGGATTCGGGCCCTCCTACGCTGGATCTGCCCGGGAGCGACGAAGAGGTCAC
CTTGGCTGATGGCTTTAGGCAAGGGGCCGATGGCGGCAAGGCTAACTCGGCTGGCGATGGCAAGAGGACGTTCGGCAAGG
CTAGCCTGGCCAATGACGGTAGGAGGTCGTGCGACGTTGCCGGCGGCAGTAGGAGGCCAGCGCATCGCAAGCAGCGACGA
TGGGGCATCGGCATGGCAACAGTGGCCGTCGAGAGTGCTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29686.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis