Browse Element(s) Details


Os.56058.1.S1_at

Description gb:AK109186.1
DB_XREF= gi:32994395
TID=Os.56058.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56058 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-156-A09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-156-A09, full insert sequence.
FL= gb:AK109186.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0244011/11DCL protein, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g02380OsAffx.17532.1.S1_x_at11/119+981778..982332hypothetical protein
LOC_Os09g02390Os.57352.1.S1_at4/119+986487..986860hypothetical protein
LOC_Os09g02400Os.10647.2.S1_at11/119+992257..994621expressed protein
LOC_Os09g02400Os.37570.1.S1_s_at11/119+992257..994621expressed protein
LOC_Os09g02410OsAffx.29688.1.S1_at11/119+995050..996725D-mannose binding lectin family protein
LOC_Os09g02410Os.27556.1.S1_at2/119+995050..996725D-mannose binding lectin family protein
LOC_Os09g02420NANA9+1000951..1002281expressed protein
LOC_Os09g02430NANA9+1003701..1003943hypothetical protein
LOC_Os09g02440Os.56058.1.S1_at11/119+1005810..1011534DCL protein, chloroplast precursor, putative, expressed
LOC_Os09g02450NANA9+1014115..1014456hypothetical protein
LOC_Os09g02460OsAffx.22947.5.S1_x_at1/119+1017949..1021957retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g02470OsAffx.17535.1.S1_at11/119+1025975..1027866hypothetical protein
LOC_Os09g02480OsAffx.16467.1.S1_at9/119+1029014..1030107hypothetical protein
LOC_Os09g02480Os.26886.6.S1_s_at6/119+1029014..1030107hypothetical protein
LOC_Os09g02480Os.26886.2.S1_s_at5/119+1029014..1030107hypothetical protein
LOC_Os09g02480OsAffx.3425.1.S1_at1/119+1029014..1030107hypothetical protein
LOC_Os09g02490NANA9+1030306..1032991transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g02500Os.26886.3.S1_x_at6/119+1034701..1038055transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g02500Os.26886.1.S1_x_at6/119+1034701..1038055transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0006306biological_processDNA methylation
GO:0006350biological_processtranscription
GO:0035194biological_processRNA-mediated posttranscriptional gene silencing
GO:0005634cellular_componentnucleus
GO:0030880cellular_componentRNA polymerase complex
GO:0003677molecular_functionDNA binding
GO:0003899molecular_functionDNA-directed RNA polymerase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56058.1.S1_at--636--7771Chr09:1009953..1009977 (25 bp)
GGTGCATTTCTAAGTCCAGACGATC
LOC_Os09g02440
Os.56058.1.S1_at--872--8571Chr09:1006210..1006233 (24 bp)
TGGTTGGTAAGCACCCTGATTTCAG
LOC_Os09g02440
Os.56058.1.S1_at--862--4171Chr09:1006091..1006115 (25 bp)
CCCAGCCAGGCAGACGATTTTATAC
LOC_Os09g02440
Os.56058.1.S1_at--674--10331Chr09:1006073..1006097 (25 bp)
TTTATACAGAATCATCTCACCCGGC
LOC_Os09g02440
Os.56058.1.S1_at--215--5191Chr09:1006050..1006074 (25 bp)
GCAATTTACTCGACGTCCCAAGTAG
LOC_Os09g02440
Os.56058.1.S1_at--158--1431Chr09:1005977..1006001 (25 bp)
AGAACCCGTATGTCTCAGTTAGAAC
LOC_Os09g02440
Os.56058.1.S1_at--427--2591Chr09:1005947..1005971 (25 bp)
AACGAACTCGTGTTTCTTAATGTCA
LOC_Os09g02440
Os.56058.1.S1_at--799--1691Chr09:1005879..1005903 (25 bp)
ACCAATTATCTCTCATGTTTTCTCT
LOC_Os09g02440
Os.56058.1.S1_at--1132--8771Chr09:1005864..1005888 (25 bp)
TGTTTTCTCTGCTATTCTACTGAAG
LOC_Os09g02440
Os.56058.1.S1_at--105--5431Chr09:1005843..1005867 (25 bp)
GAAGCCTGTAGGCACACGTTATATG
LOC_Os09g02440
Os.56058.1.S1_at--613--1891Chr09:1005828..1005852 (25 bp)
ACGTTATATGGTCATCTTCCTTGAT
LOC_Os09g02440
Target Sequence 
GGTGCATTTCTAAGTCCAGACGATCAAAAGGCTGTAGTAGAAAAGGTTCTTGTTCACCACCCCACTTCTGAAGATAAGAT
TGGCTGTGGGGTTGATGCTATTATGGTTGGTAAGCACCCTGATTTCAGGAAGTCAAGATGCCTCTTTATTGTTAGAACAA
ACGGTGAGACTGAAGATTTTTCATACCGCAAGTGTATCAAGGAGTACATCAAACAGAAGTATCCCAGCCAGGCAGACGAT
TTTATACAGAATCATCTCACCCGGCAATTTACTCGACGTCCCAAGTAGAAATGCCCCTTTTTTTTNNCGTGATAGTGTCT
TTGGCTNATAGGCAAAATAGAACCCGTATGTCTCAGTTAGAACATGTAAACGAACTCGTGTTTCTTAATGTCAAGTGAAA
ATGTTTTGTTATCAACACATTCATGAAGATCCTTTAACCAATTATCTCTCATGTTTTCTCTGCTATTCTACTGAAGCCTG
TAGGCACACGTTATATGGTCATCTTCCTTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56058.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis