Browse Element(s) Details


OsAffx.17535.1.S1_at

Description tigr:9637.m00091
TID=OsAffx.17535.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0247011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g02420NANA9+1000951..1002281expressed protein
LOC_Os09g02430NANA9+1003701..1003943hypothetical protein
LOC_Os09g02440Os.56058.1.S1_at11/119+1005810..1011534DCL protein, chloroplast precursor, putative, expressed
LOC_Os09g02450NANA9+1014115..1014456hypothetical protein
LOC_Os09g02460OsAffx.22947.5.S1_x_at1/119+1017949..1021957retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g02470OsAffx.17535.1.S1_at11/119+1025975..1027866hypothetical protein
LOC_Os09g02480OsAffx.16467.1.S1_at9/119+1029014..1030107hypothetical protein
LOC_Os09g02480Os.26886.6.S1_s_at6/119+1029014..1030107hypothetical protein
LOC_Os09g02480Os.26886.2.S1_s_at5/119+1029014..1030107hypothetical protein
LOC_Os09g02480OsAffx.3425.1.S1_at1/119+1029014..1030107hypothetical protein
LOC_Os09g02490NANA9+1030306..1032991transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g02500Os.26886.3.S1_x_at6/119+1034701..1038055transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g02500Os.26886.1.S1_x_at6/119+1034701..1038055transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g02510OsAffx.17536.1.S1_at11/119+1047804..1050501hypothetical protein
LOC_Os09g02510Os.51198.1.S1_at1/119+1047804..1050501hypothetical protein
LOC_Os09g02520OsAffx.29689.1.S1_at11/119+1051451..1051870hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17535.1.S1_at--574--1091Chr09:1026395..1026419 (25 bp)
AGTGGCGGCCAGTCCGATGCTAGTC
LOC_Os09g02470
OsAffx.17535.1.S1_at--1063--611Chr09:1026411..1026435 (25 bp)
ATGCTAGTCTTCTCCTAGGTCTATA
LOC_Os09g02470
OsAffx.17535.1.S1_at--541--1031Chr09:1026427..1026450 (24 bp)
AGGTCTATATGTTGGCGCTGTCGGC
LOC_Os09g02470
OsAffx.17535.1.S1_at--157--31Chr09:1026660..1026684 (25 bp)
ATTGGCTCTCCTCTGATCTACCAAA
LOC_Os09g02470
OsAffx.17535.1.S1_at--988--6411Chr09:1026674..1026698 (25 bp)
GATCTACCAAACTGAGTCCAGCCTA
LOC_Os09g02470
OsAffx.17535.1.S1_at--1032--4351Chr09:1026691..1026715 (25 bp)
CCAGCCTACGGCTTTATGATGTACC
LOC_Os09g02470
OsAffx.17535.1.S1_at--1041--1431Chr09:1026735..1026759 (25 bp)
AGAACGGACAGGGATATCACCACCT
LOC_Os09g02470
OsAffx.17535.1.S1_at--299--3291Chr09:1026848..1026869 (22 bp)
CAAAGCCTAGCGCAGAAACTTCCTT
LOC_Os09g02470
OsAffx.17535.1.S1_at--1155--3411Chr09:1026857..1026881 (25 bp)
CAGAAACTTCCTTCTTTACCCAGAG
LOC_Os09g02470
OsAffx.17535.1.S1_at--97--3211Chr09:1026929..1026953 (25 bp)
CAATGGGAATCTCACTTAAGCAGGT
LOC_Os09g02470
OsAffx.17535.1.S1_at--492--791Chr09:1027489..1027513 (25 bp)
ATGTGGTCCCTTCAATCCTTATGCT
LOC_Os09g02470
Target Sequence 
AGTGGCGGCCAGTCCGATGCTAGTCTTCTCCTAGGTCTATATGTTGGCGCTGTCGGCATTGGCTCTCCTCTGATCTACCA
AACTGAGTCCAGCCTACGGCTTTATGATGTACCTGAACGTGGAGGGATACAAAGAACGGACAGGGATATCACCACCTGCC
ACTTACCTCACTTTCCGTGGAGCACACAACAAACAAAGCCTAGCGCAGAAACTTCCTTCTTTACCCAGAGTCATAGTACT
AGAGCACTTAATAATAATACTAAGCACAAACCCCTAACAATGGGAATCTCACTTAAGCAGGTGAGCACTATGGCGGTTGG
CAGTGGATGTACTCAAATTCAATCGGTTTTGACTGACATGTGGTCCCTTCAATCCTTATGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17535.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis