Browse Element(s) Details


OsAffx.17536.1.S1_at

Description tigr:9637.m00095
TID=OsAffx.17536.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0251011/11hypothetical protein
LOC_Os01g346501/11
LOC_Os02g490001/11retrotransposon protein, putative, unclassified
LOC_Os09g170101/11lectin receptor kinase 1, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g02470OsAffx.17535.1.S1_at11/119+1025975..1027866hypothetical protein
LOC_Os09g02480OsAffx.16467.1.S1_at9/119+1029014..1030107hypothetical protein
LOC_Os09g02480Os.26886.6.S1_s_at6/119+1029014..1030107hypothetical protein
LOC_Os09g02480Os.26886.2.S1_s_at5/119+1029014..1030107hypothetical protein
LOC_Os09g02480OsAffx.3425.1.S1_at1/119+1029014..1030107hypothetical protein
LOC_Os09g02490NANA9+1030306..1032991transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g02500Os.26886.3.S1_x_at6/119+1034701..1038055transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g02500Os.26886.1.S1_x_at6/119+1034701..1038055transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g02510OsAffx.17536.1.S1_at11/119+1047804..1050501hypothetical protein
LOC_Os09g02510Os.51198.1.S1_at1/119+1047804..1050501hypothetical protein
LOC_Os09g02520OsAffx.29689.1.S1_at11/119+1051451..1051870hypothetical protein
LOC_Os09g02530Os.27750.1.A1_at11/119+1054332..1055393expressed protein
LOC_Os09g02530OsAffx.17537.1.S1_x_at10/119+1054332..1055393expressed protein
LOC_Os09g02540OsAffx.29690.1.S1_at11/119+1058839..1059630expressed protein
LOC_Os09g02550OsAffx.29691.1.S1_at11/119+1060676..1061128hypothetical protein
LOC_Os09g02560OsAffx.29692.2.S1_at11/119+1063176..1063888hypothetical protein
LOC_Os09g02560OsAffx.29692.2.S1_x_at11/119+1063176..1063888hypothetical protein
LOC_Os09g02570OsAffx.29693.1.S1_x_at11/119+1069950..1070345hypothetical protein
LOC_Os09g02580OsAffx.29693.1.S1_x_at3/119+1074066..1074317hypothetical protein
LOC_Os09g02580OsAffx.6499.1.S1_x_at1/119+1074066..1074317hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17536.1.S1_at--39--5811Chr09:1050447..1050471 (25 bp)
GACGCGAACCGTGTCAATGAACATA
LOC_Os09g02510
OsAffx.17536.1.S1_at--581--8971Chr09:1050430..1050454 (25 bp)
TGAACATACGAAGGCCTGGGAGATC
LOC_Os09g02510
OsAffx.17536.1.S1_at--844--31326Chr11:997377..997399 (23 bp)
AATTAATGAGATGTGGGCGTGCCAG
NONE
OsAffx.17536.1.S1_at--263--9271Chr09:1050271..1050370 (25 bp)
TCCTGCACCTGACAAGATATCAAGA
LOC_Os09g02510
OsAffx.17536.1.S1_at--166--9011Chr09:1047981..1048005 (25 bp)
TGAAGGAAGCACATCCAGTGGCGGC
LOC_Os09g02510
OsAffx.17536.1.S1_at--1046--4751Chr09:1047934..1047958 (25 bp)
GCTGCAGTGGCAGGTCTAGCAACAA
LOC_Os09g02510
OsAffx.17536.1.S1_at--341--10011Chr09:1047918..1047942 (25 bp)
TAGCAACAACACGAGCAGATCCATT
LOC_Os09g02510
OsAffx.17536.1.S1_at--240--1871Chr09:1047908..1047932 (25 bp)
ACGAGCAGATCCATTGACGGCGGCG
LOC_Os09g02510
OsAffx.17536.1.S1_at--270--5071Chr09:1047874..1047898 (25 bp)
GCAGCTCGGCATGGTGTGGCCACTA
LOC_Os09g02510
OsAffx.17536.1.S1_at--74--7551Chr09:1047859..1047883 (25 bp)
GTGGCCACTACTGGAGAACTGGTCT
LOC_Os09g02510
OsAffx.17536.1.S1_at--115--5471Chr09:1047844..1047868 (25 bp)
GAACTGGTCTTTATCCAGATGGCAA
LOC_Os09g02510
Target Sequence 
GACGCGAACCGTGTCAATGAACATACGAAGGCCTGGGAGATCTGCTTAACTCTAGTGAAGGTTCTAAAATTAATGAGATG
TGGGCGTGCCAGTCAGTTTGATCCTGCACCTGACAAGATATCAAGAAGCGGTGACAGCAAGCAGCGGCGATGGGATGGAG
CAAGCGGAGCAATGGCAGTGGAGCAGGCAGCAATGTCAGCCATGGAGCGAGCAGTCTGGCCGTGGACTGAAGGAAGCACA
TCCAGTGGCGGCGGCGAGGCAGTGGAGAGCTCGTGCTGCAGTGGCAGGTCTAGCAACAACACGAGCAGATCCATTGACGG
CGGCGGGTCCGGCAGCAGCTCGGCATGGTGTGGCCACTACTGGAGAACTGGTCTTTATCCAGATGGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17536.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis