Browse Element(s) Details


Os.27750.1.A1_at

Description gb:AK062770.1
DB_XREF= gi:32972788
TID=Os.27750.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27750 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-107-A02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-107-A02, full insert sequence.
FL= gb:AK062770.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0253011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g02480OsAffx.16467.1.S1_at9/119+1029014..1030107hypothetical protein
LOC_Os09g02480Os.26886.6.S1_s_at6/119+1029014..1030107hypothetical protein
LOC_Os09g02480Os.26886.2.S1_s_at5/119+1029014..1030107hypothetical protein
LOC_Os09g02480OsAffx.3425.1.S1_at1/119+1029014..1030107hypothetical protein
LOC_Os09g02490NANA9+1030306..1032991transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g02500Os.26886.3.S1_x_at6/119+1034701..1038055transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g02500Os.26886.1.S1_x_at6/119+1034701..1038055transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g02510OsAffx.17536.1.S1_at11/119+1047804..1050501hypothetical protein
LOC_Os09g02510Os.51198.1.S1_at1/119+1047804..1050501hypothetical protein
LOC_Os09g02520OsAffx.29689.1.S1_at11/119+1051451..1051870hypothetical protein
LOC_Os09g02530Os.27750.1.A1_at11/119+1054332..1055393expressed protein
LOC_Os09g02530OsAffx.17537.1.S1_x_at10/119+1054332..1055393expressed protein
LOC_Os09g02540OsAffx.29690.1.S1_at11/119+1058839..1059630expressed protein
LOC_Os09g02550OsAffx.29691.1.S1_at11/119+1060676..1061128hypothetical protein
LOC_Os09g02560OsAffx.29692.2.S1_at11/119+1063176..1063888hypothetical protein
LOC_Os09g02560OsAffx.29692.2.S1_x_at11/119+1063176..1063888hypothetical protein
LOC_Os09g02570OsAffx.29693.1.S1_x_at11/119+1069950..1070345hypothetical protein
LOC_Os09g02580OsAffx.29693.1.S1_x_at3/119+1074066..1074317hypothetical protein
LOC_Os09g02580OsAffx.6499.1.S1_x_at1/119+1074066..1074317hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0004842molecular_functionubiquitin-protein ligase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27750.1.A1_at--122--4531Chr09:1054990..1055014 (25 bp)
GCCGCGTGTGAGTTGTTATGAGTCA
LOC_Os09g02530
Os.27750.1.A1_at--235--9751Chr09:1055078..1055102 (25 bp)
TAATTTATGTTGTTCGTTGCGACCG
LOC_Os09g02530
Os.27750.1.A1_at--1023--4031Chr09:1055092..1055116 (25 bp)
CGTTGCGACCGATGTTTTTGTCTTT
LOC_Os09g02530
Os.27750.1.A1_at--251--8011Chr09:1055119..1055143 (25 bp)
GGATGGTAACATGCTGTTCTTCCTG
LOC_Os09g02530
Os.27750.1.A1_at--173--6731Chr09:1055134..1055158 (25 bp)
GTTCTTCCTGATCGGCTTGTTTATA
LOC_Os09g02530
Os.27750.1.A1_at--51--5611Chr09:1055159..1055183 (25 bp)
GAAATTCCAGTTTATGTTGGCAGGA
LOC_Os09g02530
Os.27750.1.A1_at--1093--651Chr09:1055223..1055247 (25 bp)
ATGCAATAGCACAGCGCAATCTTAT
LOC_Os09g02530
Os.27750.1.A1_at--633--4551Chr09:1055236..1055260 (25 bp)
GCGCAATCTTATTTTAGGTAGCCTT
LOC_Os09g02530
Os.27750.1.A1_at--282--5531Chr09:1055282..1055306 (25 bp)
GAAAACCTGCAATTTGATTCATGTT
LOC_Os09g02530
Os.27750.1.A1_at--1090--6551Chr09:1055297..1055321 (25 bp)
GATTCATGTTTATCTTAGCTTCCCA
LOC_Os09g02530
Os.27750.1.A1_at--908--9991Chr09:1055312..1055336 (25 bp)
TAGCTTCCCATGTTTGTTTCAAGGT
LOC_Os09g02530
Target Sequence 
GCCGCGTGTGAGTTGTTATGAGTCATGAGAATTGGATGCTTTGGTTGCTCCATTAGCTTCTTCATTCTTTCATGTTTGTA
TGTTACATTAATTTATGTTGTTCGTTGCGACCGATGTTTTTGTCTTTTGGGATGGTAACATGCTGTTCTTCCTGATCGGC
TTGTTTATAGAAATTCCAGTTTATGTTGGCAGGATACTTAATTATTTATTCTTGCTTTTAATAGCAGGGATNGATGCAAT
AGCACAGCGCAATCTTATTTTAGGTAGCCTTTTTCTTTGGAAACAAGATATGGAAAACCTGCAATTTGATTCATGTTTAT
CTTAGCTTCCCATGTTTGTTTCAAGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27750.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis