Browse Element(s) Details


OsAffx.29692.2.S1_x_at

Description tigr:9637.m00100
TID=OsAffx.29692.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0256011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g02510OsAffx.17536.1.S1_at11/119+1047804..1050501hypothetical protein
LOC_Os09g02510Os.51198.1.S1_at1/119+1047804..1050501hypothetical protein
LOC_Os09g02520OsAffx.29689.1.S1_at11/119+1051451..1051870hypothetical protein
LOC_Os09g02530Os.27750.1.A1_at11/119+1054332..1055393expressed protein
LOC_Os09g02530OsAffx.17537.1.S1_x_at10/119+1054332..1055393expressed protein
LOC_Os09g02540OsAffx.29690.1.S1_at11/119+1058839..1059630expressed protein
LOC_Os09g02550OsAffx.29691.1.S1_at11/119+1060676..1061128hypothetical protein
LOC_Os09g02560OsAffx.29692.2.S1_at11/119+1063176..1063888hypothetical protein
LOC_Os09g02560OsAffx.29692.2.S1_x_at11/119+1063176..1063888hypothetical protein
LOC_Os09g02570OsAffx.29693.1.S1_x_at11/119+1069950..1070345hypothetical protein
LOC_Os09g02580OsAffx.29693.1.S1_x_at3/119+1074066..1074317hypothetical protein
LOC_Os09g02580OsAffx.6499.1.S1_x_at1/119+1074066..1074317hypothetical protein
LOC_Os09g02589NANA9+1084396..1084533NA

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29692.2.S1_x_at--113--3711Chr09:1063831..1063855 (25 bp)
CTAGGCACTGGCAAAGAAGACGAGA
LOC_Os09g02560
OsAffx.29692.2.S1_x_at--1144--951Chr09:1063790..1063814 (25 bp)
AGGAGCCATTGAAGCCCGGGTCGTC
LOC_Os09g02560
OsAffx.29692.2.S1_x_at--87--5411Chr09:1063780..1063804 (25 bp)
GAAGCCCGGGTCGTCGGCAAGGACT
LOC_Os09g02560
OsAffx.29692.2.S1_x_at--173--2931Chr09:1063762..1063786 (25 bp)
AAGGACTCCTCCAAGGATGGCGGGC
LOC_Os09g02560
OsAffx.29692.2.S1_x_at--273--7471Chr09:1063712..1063736 (25 bp)
GTGTGACCGGCCGAGGGATCGAGAA
LOC_Os09g02560
OsAffx.29692.2.S1_x_at--175--10391Chr09:1063468..1063492 (25 bp)
TTTTGGCCAAAAGCCTTCCTCCTAG
LOC_Os09g02560
OsAffx.29692.2.S1_x_at--295--4392Chr06:26746986..26747020 (25 bp)
GCCAAAAGCCTTCCTCCTAGGCTAG
NONE
OsAffx.29692.2.S1_x_at--1134--7271Chr09:1063341..1063365 (25 bp)
GTGCCCGTACGTTTGCCAGAGCAAA
LOC_Os09g02560
OsAffx.29692.2.S1_x_at--477--373Chr06:26747293..26747317 (25 bp)
ATCAAATCCGGCCAAATCTTTCTTG
NONE
OsAffx.29692.2.S1_x_at--42--3296Chr06:26747295..26747318 (24 bp)
CAAATCCGGCCAAATCTTTCTTGGG
NONE
OsAffx.29692.2.S1_x_at--304--9593Chr11:12956177..12956201 (25 bp)
TCTTGGGTAACCAAAATTGTTCGAG
NONE
Target Sequence 
CTAGGCACTGGCAAAGAAGACGAGAAGGAGGGGCGGGTTGGAGGAGCCATTGAAGCCCGGGTCGTCGGCAAGGACTCCTC
CAAGGATGGCGGGCGGCGGGGACGTGAGGCCGGGGCTATGTGTGACCGGCCGAGGGATCGAGAACGGTTTTGGGGGTTAA
TGAAAATATTTCCTGGGTTTTTGGCCAAAAGCCTTCCTCCTAGGCTAGCCCGCTACCTTCCTCCATTTGGTCTGCTTCTC
TTCGACCCTACCATCTTTAACTTCCCGAATATGACTACCATCTTCAACCTCCCGAAGATAATCCCGTGCCCGTACGTTTG
CCAGAGCAAATCTCCCCCATCAAATCCGGCCAAATCTTTCTTGGGTAACCAAAATTGTTCGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29692.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis