Browse Element(s) Details


Os.51125.1.S1_at

Description gb:AK061001.1
DB_XREF= gi:32971019
TID=Os.51125.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51125 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-203-F12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-203-F12, full insert sequence.
FL= gb:AK061001.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5937011/11Pathogenesis-related protein 5 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g59300OsAffx.14477.1.S1_at11/114+35045648..35047185hypothetical protein
LOC_Os04g59300OsAffx.31661.2.S1_at1/114+35045648..35047185hypothetical protein
LOC_Os04g59310Os.53827.1.S1_at11/114+35048224..35051178MAP3K-like protein kinase, putative, expressed
LOC_Os04g59320Os.54119.1.S1_at10/114+35051975..35057701protein kinase family protein, putative, expressed
LOC_Os04g59320Os.6595.2.S1_s_at10/114+35051975..35057701protein kinase family protein, putative, expressed
LOC_Os04g59330OsAffx.4214.1.S1_x_at11/114+35058615..35060079expressed protein
LOC_Os04g59330Os.8314.1.S1_at11/114+35058615..35060079expressed protein
LOC_Os04g59350OsAffx.14478.1.S1_at11/114+35060596..35061683hypothetical protein
LOC_Os04g59340Os.37570.1.S1_at11/114+35061587..35063617expressed protein
LOC_Os04g59340Os.37570.1.S1_s_at11/114+35061587..35063617expressed protein
LOC_Os04g59340Os.10647.2.S1_at7/114+35061587..35063617expressed protein
LOC_Os04g59360OsAffx.26665.1.S1_at11/114+35064131..35067101csAtPR5, putative
LOC_Os04g59370Os.51125.1.S1_at11/114+35068706..35070078Pathogenesis-related protein 5 precursor, putative, expressed
LOC_Os04g59380Os.257.1.S1_at11/114+35078601..35081273expressed protein
LOC_Os04g59390Os.35344.3.S1_x_at11/114+35084388..35090006transposon protein, putative, Mutator sub-class
LOC_Os04g59390Os.35344.18.S1_x_at9/114+35084388..35090006transposon protein, putative, Mutator sub-class
LOC_Os04g59390OsAffx.22940.5.S1_x_at3/114+35084388..35090006transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
GO:0009627biological_processsystemic acquired resistance
GO:0042828biological_processresponse to pathogen
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51125.1.S1_at--414--6431Chr04:35069647..35069671 (25 bp)
GATCTTGGCCTAGTGTCATTTCTGC
LOC_Os04g59370
Os.51125.1.S1_at--124--4831Chr04:35069675..35069699 (25 bp)
GCTCTTCACTTTTCTGGCTTTGCAG
LOC_Os04g59370
Os.51125.1.S1_at--22--8311Chr04:35069690..35069714 (25 bp)
GGCTTTGCAGTTTTCGCTCTAATTA
LOC_Os04g59370
Os.51125.1.S1_at--894--10051Chr04:35069763..35069787 (25 bp)
TAGTACTCTAGTCTTCTTGCCTGGA
LOC_Os04g59370
Os.51125.1.S1_at--726--3631Chr04:35069778..35069802 (25 bp)
CTTGCCTGGACGATCCATCTGAGAA
LOC_Os04g59370
Os.51125.1.S1_at--7--5971Chr04:35069798..35069822 (25 bp)
GAGAAGCAAACGGTACGCGCGCGCT
LOC_Os04g59370
Os.51125.1.S1_at--308--8611Chr04:35069828..35069852 (25 bp)
TGGTGCTTGCTTGTACGTTTCATCA
LOC_Os04g59370
Os.51125.1.S1_at--767--6831Chr04:35069844..35069868 (25 bp)
GTTTCATCACATCACACGCATGAGA
LOC_Os04g59370
Os.51125.1.S1_at--330--351Chr04:35069949..35069973 (25 bp)
ATAAGTGGATGTGCCTTTTCCTCTG
LOC_Os04g59370
Os.51125.1.S1_at--378--10191Chr04:35069989..35070013 (25 bp)
TATATATGTACCCTGCGGGCCAGTC
LOC_Os04g59370
Os.51125.1.S1_at--82--10131Chr04:35070052..35070076 (25 bp)
TATGATATGATCCATTTCTCCGAGT
LOC_Os04g59370
Target Sequence 
GATCTTGGCCTAGTGTCATTTCTGCGCTGCTCTTCACTTTTCTGGCTTTGCAGTTTTCGCTCTAATTAATTAATTGATTA
TTGGCATGGATGAGAAAACCAACCTGACATATATGCTAGTACTCTAGTCTTCTTGCCTGGACGATCCATCTGAGAAGCAA
ACGGTACGCGCGCGCTACAGCTGGTGCTTGCTTGTACGTTTCATCACATCACACGCATGAGATTTGTTCATTCACATGTG
AATACAGTACTACTGTATATATATACGTATATCATTCAGTAGAGAGAGACAACAGTAGTAGCATAAGTGGATGTGCCTTT
TCCTCTGTTTTTTTCTCAATCATATATATGTACCCTGCGGGCCAGTCCAATGGAGACAACAGTACGCACCCCTCATGAAT
CATGATATGATATGATCCATTTCTCCGAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51125.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis